Wall clock time and date at job start Mon Mar 30 2020 02:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 N 1.46496 * 109.47230 * 79.99891 * 8 7 2 10 10 C 1.36935 * 120.00098 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00027 * 0.02562 * 10 9 8 12 12 C 1.38810 * 120.00205 * 179.97438 * 10 9 8 13 13 N 1.31618 * 119.99992 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00163 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47269 * 60.00053 * 14 12 10 16 16 H 1.48501 * 109.47069 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46942 * 299.99876 * 14 12 10 18 18 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 19 19 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 20 20 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 21 21 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 22 22 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 23 23 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 24 24 H 1.09006 * 109.46544 * 199.99819 * 8 7 2 25 25 H 1.09000 * 109.47530 * 319.99483 * 8 7 2 26 26 H 0.97001 * 120.00401 * 0.02562 * 9 8 7 27 27 H 0.97002 * 120.00000 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 7 1.0317 -2.8256 -1.3643 10 6 0.3445 -3.9842 -1.6103 11 1 0.1350 -4.6697 -0.8025 12 6 -0.0837 -4.2772 -2.8978 13 7 0.1712 -3.4416 -3.8822 14 14 -1.0217 -5.8574 -3.2333 15 1 -2.2693 -5.8730 -2.4281 16 1 -1.3626 -5.9339 -4.6766 17 1 -0.1784 -7.0220 -2.8620 18 1 -0.3634 -0.0050 1.0276 19 1 -0.3632 0.8924 -0.5095 20 1 -0.3633 -0.8876 -0.5182 21 1 1.6675 2.1276 0.0045 22 1 5.3047 0.1285 -0.0153 23 1 4.1737 -2.0588 -0.0158 24 1 2.1561 -3.3005 0.3414 25 1 0.6212 -2.4570 0.6592 26 1 1.2201 -2.2102 -2.0900 27 1 -0.1284 -3.6462 -4.7819 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160606290.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:08 Heat of formation + Delta-G solvation = 37.391012 kcal Electronic energy + Delta-G solvation = -11426.274246 eV Core-core repulsion = 9377.054771 eV Total energy + Delta-G solvation = -2049.219475 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93266 -35.29941 -33.03858 -31.95831 -30.29996 -27.11042 -25.79541 -23.05751 -22.14306 -20.78662 -17.37074 -16.25200 -15.92897 -14.72725 -14.68573 -13.96287 -13.30824 -13.16003 -13.09458 -12.61333 -12.36405 -11.73833 -11.53628 -11.09168 -10.96430 -10.81405 -10.19260 -9.86724 -9.11381 -9.10455 -8.94169 -8.54648 -7.00881 -5.81306 -3.12111 1.46087 1.61301 3.41317 3.45744 3.46946 4.11013 4.57190 4.74494 5.10681 5.19025 5.35132 5.37794 5.52603 5.78895 5.94797 6.00987 6.06218 6.12719 6.28751 6.39630 6.51500 6.67466 6.95195 7.08053 7.63961 8.26397 8.35745 9.47549 10.01733 10.37760 11.40926 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.061898 B = 0.008854 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.252105 B = 3161.815384 C = 3277.874740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.087 3.913 4 N -0.492 5.492 5 C 0.080 3.920 6 C -0.156 4.156 7 C -0.039 4.039 8 C 0.186 3.814 9 N -0.724 5.724 10 C -0.246 4.246 11 H 0.072 0.928 12 C -0.010 4.010 13 N -0.931 5.931 14 Si 0.910 3.090 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.285 1.285 18 H 0.066 0.934 19 H 0.063 0.937 20 H 0.092 0.908 21 H 0.149 0.851 22 H 0.150 0.850 23 H 0.132 0.868 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.386 0.614 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 5.804 7.953 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.120 4.120 3 C -0.070 4.070 4 N -0.200 5.200 5 C -0.076 4.076 6 C -0.177 4.177 7 C -0.047 4.047 8 C 0.059 3.941 9 N -0.369 5.369 10 C -0.376 4.376 11 H 0.090 0.910 12 C -0.206 4.206 13 N -0.579 5.579 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.212 1.212 18 H 0.084 0.916 19 H 0.082 0.918 20 H 0.111 0.889 21 H 0.167 0.833 22 H 0.167 0.833 23 H 0.150 0.850 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.220 0.780 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.665 6.436 7.960 10.873 hybrid contribution -0.799 -1.495 -0.550 1.782 sum 2.866 4.941 7.411 9.356 Atomic orbital electron populations 1.20829 0.90163 1.04424 1.02081 1.20871 0.97876 0.93415 0.99870 1.22571 0.89930 0.97283 0.97248 1.67584 1.08400 1.31498 1.12555 1.22600 0.99925 0.87874 0.97224 1.22089 0.94850 0.99448 1.01269 1.20642 0.93677 0.96248 0.94134 1.19674 0.95274 0.89154 0.90023 1.42291 1.67178 1.24386 1.03018 1.19182 1.27740 0.97193 0.93524 0.91042 1.24761 1.01480 0.98684 0.95715 1.69664 1.51202 1.36848 1.00188 0.86237 0.79761 0.83020 0.76953 1.21161 1.21644 1.21194 0.91556 0.91795 0.88909 0.83320 0.83290 0.84976 0.95223 0.94790 0.78044 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.35 36.01 0.34 -1.49 15 2 C -0.12 -1.98 5.90 -104.48 -0.62 -2.60 15 3 C 0.09 1.36 10.86 -17.54 -0.19 1.17 15 4 N -0.49 -8.10 10.36 -13.25 -0.14 -8.23 15 5 C 0.08 1.22 11.18 -17.55 -0.20 1.03 15 6 C -0.16 -2.54 9.78 -39.44 -0.39 -2.92 15 7 C -0.04 -0.70 5.29 -104.32 -0.55 -1.25 15 8 C 0.19 3.76 5.56 -5.20 -0.03 3.73 15 9 N -0.72 -18.19 5.02 -61.09 -0.31 -18.49 15 10 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 15 11 H 0.07 1.89 7.83 -52.49 -0.41 1.48 15 12 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 15 13 N -0.93 -28.04 13.06 55.49 0.72 -27.31 15 14 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 15 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 18 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 19 H 0.06 0.87 8.09 -51.93 -0.42 0.45 15 20 H 0.09 1.74 6.53 -51.93 -0.34 1.40 15 21 H 0.15 1.91 8.06 -52.49 -0.42 1.49 15 22 H 0.15 1.79 8.06 -52.48 -0.42 1.37 15 23 H 0.13 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.03 0.60 8.04 -51.93 -0.42 0.18 15 25 H 0.03 0.68 7.40 -51.93 -0.38 0.29 15 26 H 0.39 10.44 7.66 -40.82 -0.31 10.13 15 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 238.90 15.07 3.60 3.60 Total: -1.00 -30.46 238.90 -6.13 -36.59 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.11 Total: 6.37 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.88 Total: -9.61 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.28 Total: -54.04 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.46 -6.13 -36.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160606290.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.981 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds