Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 113.01521 * 2 1 4 4 C 1.54176 * 113.84092 * 131.89399 * 2 1 3 5 5 H 1.09002 * 114.77439 * 260.57113 * 4 2 1 6 6 C 1.53752 * 85.77667 * 145.26379 * 4 2 1 7 7 C 1.53985 * 113.83849 * 227.94460 * 2 1 3 8 8 H 1.08998 * 116.18540 * 97.76445 * 7 2 1 9 9 C 1.51991 * 111.18088 * 323.02507 * 7 2 1 10 10 C 1.40067 * 121.55876 * 135.73864 * 9 7 2 11 11 H 1.08000 * 120.00323 * 203.28119 * 10 9 7 12 12 C 1.40309 * 119.99846 * 23.27711 * 10 9 7 13 13 N 1.30686 * 120.00542 * 17.34646 * 12 10 9 14 14 Si 1.86804 * 119.99856 * 197.34242 * 12 10 9 15 15 H 1.48498 * 109.47270 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47347 * 120.00486 * 14 12 10 17 17 H 1.48503 * 109.47044 * 240.00405 * 14 12 10 18 18 C 1.35537 * 116.88102 * 315.75765 * 9 7 2 19 19 C 1.51017 * 119.10325 * 0.57043 * 18 9 7 20 20 H 1.09003 * 109.46749 * 288.10834 * 1 2 3 21 21 H 1.09000 * 109.47103 * 168.10827 * 1 2 3 22 22 H 1.09002 * 109.47251 * 48.10733 * 1 2 3 23 23 H 1.08994 * 109.47392 * 69.66920 * 3 2 1 24 24 H 1.08996 * 109.47192 * 189.66913 * 3 2 1 25 25 H 1.09003 * 109.47188 * 309.66812 * 3 2 1 26 26 H 1.08996 * 113.86521 * 83.26888 * 6 4 2 27 27 H 1.09004 * 113.86156 * 214.84705 * 6 4 2 28 28 H 0.96995 * 120.00712 * 179.97438 * 13 12 10 29 29 H 1.07996 * 120.44967 * 180.54618 * 18 9 7 30 30 H 1.08995 * 109.42114 * 236.46100 * 19 18 9 31 31 H 1.09004 * 109.42229 * 116.65299 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1282 1.4082 0.0000 4 6 2.1532 -0.9417 1.0497 5 1 2.4861 -0.4501 1.9639 6 6 3.2599 -1.1828 0.0101 7 6 2.1523 -0.9435 -1.0458 8 1 2.4676 -0.4828 -1.9820 9 6 1.3386 -2.2194 -1.1875 10 6 1.0357 -2.7599 -2.4437 11 1 0.1823 -3.4115 -2.5597 12 6 1.8410 -2.4547 -3.5514 13 7 3.0385 -1.9627 -3.3731 14 14 1.2015 -2.7519 -5.2812 15 1 -0.1728 -3.3103 -5.2118 16 1 1.1765 -1.4682 -6.0272 17 1 2.0921 -3.7132 -5.9799 18 6 0.9196 -2.8094 -0.0416 19 6 1.2665 -2.1715 1.2825 20 1 -0.3633 0.3194 0.9768 21 1 -0.3633 -1.0056 -0.2118 22 1 -0.3634 0.6862 -0.7650 23 1 1.9416 1.8823 0.9636 24 1 3.2026 1.3466 -0.1726 25 1 1.6665 1.9992 -0.7911 26 1 4.0397 -0.4212 0.0115 27 1 3.6556 -2.1985 0.0147 28 1 3.5953 -1.7520 -4.1389 29 1 0.3449 -3.7232 -0.0749 30 1 1.8007 -2.8912 1.9027 31 1 0.3507 -1.8672 1.7893 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196479383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = 22.008931 kcal Electronic energy + Delta-G solvation = -12556.113640 eV Core-core repulsion = 10609.767492 eV Total energy + Delta-G solvation = -1946.346149 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 192.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08024 -33.83316 -31.51338 -29.38860 -28.70593 -26.18156 -24.65223 -21.57261 -20.82846 -18.89125 -16.97516 -15.07913 -14.94446 -14.20708 -13.76515 -13.21041 -12.72040 -12.33841 -11.96522 -11.67808 -11.41675 -11.30625 -11.17585 -10.90000 -10.74919 -10.54742 -10.25039 -10.12644 -9.62976 -9.06498 -8.89719 -8.71808 -8.46964 -7.11996 -6.54873 -4.15150 2.99476 3.15250 3.21459 3.89008 4.06374 5.17695 5.40940 5.67612 5.69635 5.96311 6.19179 6.33283 6.37280 6.41281 6.51734 6.61461 6.73345 6.81090 6.86440 6.94184 7.01953 7.11121 7.22907 7.29470 7.38388 7.42836 7.55444 7.67961 8.12083 8.49108 8.70300 9.22162 9.30989 10.36066 Molecular weight = 192.12amu Principal moments of inertia in cm(-1) A = 0.045638 B = 0.013917 C = 0.013072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.379890 B = 2011.478602 C = 2141.512887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.102 4.102 5 H 0.054 0.946 6 C -0.123 4.123 7 C -0.040 4.040 8 H 0.096 0.904 9 C 0.109 3.891 10 C -0.468 4.468 11 H 0.072 0.928 12 C 0.079 3.921 13 N -0.804 5.804 14 Si 0.898 3.102 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.277 1.277 18 C -0.412 4.412 19 C -0.022 4.022 20 H 0.034 0.966 21 H 0.084 0.916 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.275 0.725 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 4.152 2.373 4.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.178 4.178 4 C -0.120 4.120 5 H 0.072 0.928 6 C -0.160 4.160 7 C -0.059 4.059 8 H 0.114 0.886 9 C 0.107 3.893 10 C -0.499 4.499 11 H 0.090 0.910 12 C -0.137 4.137 13 N -0.431 5.431 14 Si 0.724 3.276 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.434 4.434 19 C -0.059 4.059 20 H 0.053 0.947 21 H 0.103 0.897 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.222 4.233 2.250 4.798 hybrid contribution -0.177 -0.108 -0.836 0.862 sum -0.399 4.125 1.413 4.378 Atomic orbital electron populations 1.21824 0.95113 1.03641 0.98833 1.22053 0.94942 0.93415 0.99251 1.21511 1.00366 0.95682 1.00221 1.22614 0.97400 0.96829 0.95190 0.92773 1.22989 0.95481 1.00229 0.97328 1.21927 0.93963 0.94335 0.95629 0.88640 1.18512 0.88680 0.89765 0.92307 1.19256 1.11234 1.26747 0.92638 0.90973 1.25915 0.93901 0.92820 1.01038 1.69766 1.06868 1.33835 1.32659 0.86428 0.80245 0.78649 0.82313 1.18605 1.19977 1.20267 1.22100 1.24161 1.05328 0.91778 1.19793 0.95551 0.93450 0.97082 0.94739 0.89684 0.94443 0.93655 0.92849 0.93228 0.92282 0.92173 0.91388 0.90600 0.95096 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.08 37.16 0.30 -2.51 16 2 C -0.10 -2.02 1.39 -153.50 -0.21 -2.23 16 3 C -0.12 -2.14 9.13 37.16 0.34 -1.80 16 4 C -0.10 -2.14 4.39 -89.54 -0.39 -2.54 16 5 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.12 -2.76 6.93 -25.47 -0.18 -2.94 16 7 C -0.04 -0.97 3.44 -89.75 -0.31 -1.28 16 8 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 9 C 0.11 2.90 3.95 -104.26 -0.41 2.49 16 10 C -0.47 -12.85 9.06 -38.12 -0.35 -13.20 16 11 H 0.07 1.98 7.91 -52.49 -0.42 1.56 16 12 C 0.08 2.04 5.20 -17.26 -0.09 1.95 16 13 N -0.80 -20.94 10.85 55.57 0.60 -20.34 16 14 Si 0.90 19.34 29.60 -169.99 -5.03 14.31 16 15 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 C -0.41 -10.51 8.45 -35.12 -0.30 -10.81 16 19 C -0.02 -0.49 5.40 -27.53 -0.15 -0.63 16 20 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.08 1.94 5.00 -51.93 -0.26 1.68 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.93 6.69 -51.93 -0.35 0.58 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.21 6.96 -51.93 -0.36 0.84 16 27 H 0.06 1.46 8.04 -51.93 -0.42 1.04 16 28 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 29 H 0.08 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.66 7.63 -51.93 -0.40 0.26 16 LS Contribution 240.77 15.07 3.63 3.63 Total: -1.00 -26.88 240.77 -7.16 -34.03 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.61 Total: 1.87 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: -1.75 Total: -33.50 kcal Atomic # 7 Polarization: -20.94 SS G_CDS: 0.60 Total: -20.34 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.88 -7.16 -34.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196479383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.044 kcal (2) G-P(sol) polarization free energy of solvation -26.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds