Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 113.01521 * 2 1 4 4 C 1.54176 * 113.84092 * 131.89399 * 2 1 3 5 5 H 1.09002 * 114.77439 * 260.57113 * 4 2 1 6 6 C 1.53752 * 85.77667 * 145.26379 * 4 2 1 7 7 C 1.53985 * 113.83849 * 227.94460 * 2 1 3 8 8 H 1.08998 * 116.18540 * 97.76445 * 7 2 1 9 9 C 1.51991 * 111.18088 * 323.02507 * 7 2 1 10 10 C 1.40067 * 121.55876 * 135.73864 * 9 7 2 11 11 H 1.08000 * 120.00323 * 203.28119 * 10 9 7 12 12 C 1.40309 * 119.99846 * 23.27711 * 10 9 7 13 13 N 1.30686 * 120.00542 * 17.34646 * 12 10 9 14 14 Si 1.86804 * 119.99856 * 197.34242 * 12 10 9 15 15 H 1.48498 * 109.47270 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47347 * 120.00486 * 14 12 10 17 17 H 1.48503 * 109.47044 * 240.00405 * 14 12 10 18 18 C 1.35537 * 116.88102 * 315.75765 * 9 7 2 19 19 C 1.51017 * 119.10325 * 0.57043 * 18 9 7 20 20 H 1.09003 * 109.46749 * 288.10834 * 1 2 3 21 21 H 1.09000 * 109.47103 * 168.10827 * 1 2 3 22 22 H 1.09002 * 109.47251 * 48.10733 * 1 2 3 23 23 H 1.08994 * 109.47392 * 69.66920 * 3 2 1 24 24 H 1.08996 * 109.47192 * 189.66913 * 3 2 1 25 25 H 1.09003 * 109.47188 * 309.66812 * 3 2 1 26 26 H 1.08996 * 113.86521 * 83.26888 * 6 4 2 27 27 H 1.09004 * 113.86156 * 214.84705 * 6 4 2 28 28 H 0.96995 * 120.00712 * 179.97438 * 13 12 10 29 29 H 1.07996 * 120.44967 * 180.54618 * 18 9 7 30 30 H 1.08995 * 109.42114 * 236.46100 * 19 18 9 31 31 H 1.09004 * 109.42229 * 116.65299 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1282 1.4082 0.0000 4 6 2.1532 -0.9417 1.0497 5 1 2.4861 -0.4501 1.9639 6 6 3.2599 -1.1828 0.0101 7 6 2.1523 -0.9435 -1.0458 8 1 2.4676 -0.4828 -1.9820 9 6 1.3386 -2.2194 -1.1875 10 6 1.0357 -2.7599 -2.4437 11 1 0.1823 -3.4115 -2.5597 12 6 1.8410 -2.4547 -3.5514 13 7 3.0385 -1.9627 -3.3731 14 14 1.2015 -2.7519 -5.2812 15 1 -0.1728 -3.3103 -5.2118 16 1 1.1765 -1.4682 -6.0272 17 1 2.0921 -3.7132 -5.9799 18 6 0.9196 -2.8094 -0.0416 19 6 1.2665 -2.1715 1.2825 20 1 -0.3633 0.3194 0.9768 21 1 -0.3633 -1.0056 -0.2118 22 1 -0.3634 0.6862 -0.7650 23 1 1.9416 1.8823 0.9636 24 1 3.2026 1.3466 -0.1726 25 1 1.6665 1.9992 -0.7911 26 1 4.0397 -0.4212 0.0115 27 1 3.6556 -2.1985 0.0147 28 1 3.5953 -1.7520 -4.1389 29 1 0.3449 -3.7232 -0.0749 30 1 1.8007 -2.8912 1.9027 31 1 0.3507 -1.8672 1.7893 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196479383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = 8.678516 kcal Electronic energy + Delta-G solvation = -12556.691691 eV Core-core repulsion = 10609.767492 eV Total energy + Delta-G solvation = -1946.924199 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 192.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83394 -35.79084 -33.31814 -31.13489 -30.54944 -27.72043 -26.59316 -23.35686 -22.61991 -20.75476 -18.91214 -16.97102 -16.74143 -15.94045 -15.42531 -14.88412 -14.46635 -14.09932 -13.80127 -13.37210 -13.06583 -12.99359 -12.86717 -12.59132 -12.47696 -12.31458 -12.03675 -11.92071 -11.38810 -10.97316 -10.64942 -10.52687 -10.25517 -9.10283 -8.49618 -6.22524 1.24661 1.37526 1.50904 1.96559 2.24682 3.21094 3.74936 3.97288 4.01862 4.36673 4.55919 4.67503 4.82842 4.88981 4.90830 5.06313 5.06564 5.09545 5.16676 5.24662 5.30080 5.33432 5.36710 5.41806 5.55735 5.63000 5.76121 5.92344 6.09273 6.45566 6.68020 7.20266 7.30565 8.41221 Molecular weight = 192.12amu Principal moments of inertia in cm(-1) A = 0.045638 B = 0.013917 C = 0.013072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.379890 B = 2011.478602 C = 2141.512887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.094 4.094 5 H 0.088 0.912 6 C -0.120 4.120 7 C -0.054 4.054 8 H 0.073 0.927 9 C 0.088 3.912 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.043 3.957 13 N -0.824 5.824 14 Si 0.969 3.031 15 H -0.267 1.267 16 H -0.261 1.261 17 H -0.267 1.267 18 C -0.425 4.425 19 C -0.021 4.021 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.031 0.969 28 H 0.285 0.715 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 5.811 2.695 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 C -0.173 4.173 4 C -0.112 4.112 5 H 0.107 0.893 6 C -0.157 4.157 7 C -0.073 4.073 8 H 0.091 0.909 9 C 0.087 3.913 10 C -0.544 4.544 11 H 0.073 0.927 12 C -0.171 4.171 13 N -0.450 5.450 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.186 1.186 17 H -0.192 1.192 18 C -0.447 4.447 19 C -0.058 4.058 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.075 5.892 2.589 6.436 hybrid contribution -0.265 -0.690 -0.935 1.191 sum -0.190 5.203 1.654 5.463 Atomic orbital electron populations 1.21757 0.95006 1.02010 1.00443 1.22107 0.95171 0.94669 0.96996 1.21494 1.00275 0.93455 1.02090 1.22569 0.96139 0.96273 0.96261 0.89350 1.22989 0.95985 0.99289 0.97450 1.21869 0.95262 0.94272 0.95884 0.90907 1.18859 0.89206 0.90984 0.92294 1.19469 1.11923 1.28388 0.94582 0.92680 1.26630 0.93755 0.92184 1.04578 1.69800 1.07446 1.33495 1.34286 0.85362 0.79285 0.79114 0.77139 1.19082 1.18556 1.19189 1.22292 1.23837 1.04830 0.93697 1.19794 0.96656 0.94238 0.95138 0.92194 0.92761 0.93870 0.90811 0.92573 0.92725 0.89962 0.95027 0.90420 0.92868 0.94501 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 8.08 71.98 0.58 -4.72 16 2 C -0.09 -3.54 1.39 -51.53 -0.07 -3.61 16 3 C -0.12 -3.69 9.13 71.98 0.66 -3.03 16 4 C -0.09 -3.72 4.39 -10.09 -0.04 -3.77 16 5 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 6 C -0.12 -5.26 6.93 31.41 0.22 -5.04 16 7 C -0.05 -2.64 3.44 -10.23 -0.04 -2.67 16 8 H 0.07 3.83 6.14 -2.39 -0.01 3.81 16 9 C 0.09 4.84 3.95 -19.63 -0.08 4.76 16 10 C -0.51 -29.33 9.06 23.22 0.21 -29.12 16 11 H 0.05 3.20 7.91 -2.91 -0.02 3.17 16 12 C 0.04 2.26 5.20 85.37 0.44 2.70 16 13 N -0.82 -43.28 10.85 21.89 0.24 -43.04 16 14 Si 0.97 40.00 29.60 68.60 2.03 42.03 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 17 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 18 C -0.43 -22.33 8.45 25.16 0.21 -22.12 16 19 C -0.02 -0.93 5.40 30.08 0.16 -0.77 16 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.05 2.47 5.00 -2.39 -0.01 2.46 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.06 1.75 6.69 -2.39 -0.02 1.73 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 3.18 6.96 -2.39 -0.02 3.17 16 27 H 0.03 1.53 8.04 -2.39 -0.02 1.51 16 28 H 0.29 13.54 8.29 -92.71 -0.77 12.77 16 29 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.87 7.63 -2.39 -0.02 1.85 16 Total: -1.00 -58.72 240.77 5.62 -53.10 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.09 Total: 15.29 kcal Atomic # 6 Polarization: -69.64 SS G_CDS: 2.26 Total: -67.39 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.24 Total: -43.04 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -58.72 5.62 -53.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196479383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.781 kcal (2) G-P(sol) polarization free energy of solvation -58.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds