Wall clock time and date at job start Mon Mar 30 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48500 * 109.47360 * 85.01479 * 3 2 1 5 5 H 1.48499 * 109.47344 * 205.01803 * 3 2 1 6 6 H 1.48504 * 109.46880 * 325.01638 * 3 2 1 7 7 C 1.40072 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99925 * 189.32451 * 7 2 1 9 9 C 1.40064 * 120.00308 * 9.32553 * 7 2 1 10 10 C 1.39621 * 127.05397 * 10.19171 * 9 7 2 11 11 N 1.33025 * 107.45951 * 179.83189 * 10 9 7 12 12 C 1.31009 * 109.97862 * 0.43936 * 11 10 9 13 13 N 1.35074 * 109.64614 * 359.72345 * 12 11 10 14 14 C 1.46509 * 126.48324 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.46836 * 264.97005 * 14 13 12 16 16 C 1.53008 * 117.49954 * 243.74612 * 15 14 13 17 17 C 1.53008 * 117.49834 * 175.09101 * 15 14 13 18 18 H 0.97000 * 119.99908 * 0.02562 * 1 2 3 19 19 H 1.07997 * 126.27336 * 359.97438 * 10 9 7 20 20 H 1.08002 * 125.17949 * 179.73935 * 12 11 10 21 21 H 1.09003 * 109.47081 * 24.96881 * 14 13 12 22 22 H 1.09001 * 109.46633 * 144.97081 * 14 13 12 23 23 H 1.09006 * 115.55493 * 29.41452 * 15 14 13 24 24 H 1.08996 * 117.49512 * 0.02562 * 16 15 14 25 25 H 1.08998 * 117.49710 * 145.01835 * 16 15 14 26 26 H 1.09001 * 117.49189 * 214.97999 * 17 15 14 27 27 H 1.09003 * 117.49617 * 359.97177 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3847 2.1073 1.3948 5 1 3.5888 1.4120 -0.5921 6 1 1.4966 2.6199 -0.8028 7 6 2.0088 -1.2131 0.0005 8 1 3.0782 -1.2191 0.1521 9 6 1.3225 -2.4182 -0.1955 10 6 -0.0056 -2.5743 -0.5969 11 7 -0.2520 -3.8799 -0.6623 12 6 0.8184 -4.5549 -0.3232 13 7 1.8198 -3.6987 -0.0253 14 6 3.1759 -4.0576 0.3973 15 6 3.2547 -4.0426 1.9251 16 6 4.1890 -3.0195 2.5744 17 6 4.5635 -4.5037 2.5697 18 1 -0.4850 0.8401 -0.0004 19 1 -0.7043 -1.7805 -0.8165 20 1 0.8894 -5.6320 -0.2875 21 1 3.4187 -5.0550 0.0308 22 1 3.8858 -3.3379 -0.0103 23 1 2.3267 -4.2783 2.4462 24 1 4.7471 -2.3569 1.9129 25 1 3.8758 -2.5825 3.5225 26 1 4.4965 -5.0425 3.5148 27 1 5.3683 -4.8182 1.9051 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212115679.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:43 Heat of formation + Delta-G solvation = 53.330547 kcal Electronic energy + Delta-G solvation = -11718.514209 eV Core-core repulsion = 9669.985924 eV Total energy + Delta-G solvation = -2048.528285 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.80469 -38.29350 -35.50906 -33.83486 -30.59676 -27.62717 -26.63693 -23.23608 -22.06332 -21.74647 -20.90365 -18.96219 -17.51444 -16.46510 -16.12667 -15.82941 -14.80797 -14.45033 -14.40183 -14.02165 -13.43513 -13.00472 -12.81019 -12.57673 -12.44150 -12.33228 -11.94965 -11.34832 -11.19773 -10.85394 -10.22146 -9.97179 -8.91729 -8.53698 -6.22284 1.29798 1.41149 1.56120 1.86910 2.21542 2.55634 2.78455 2.97233 3.40790 3.83429 3.96672 4.10719 4.31142 4.42310 4.49968 4.72683 4.80041 5.01899 5.02957 5.18719 5.27584 5.28004 5.70839 5.80962 6.02478 6.55740 6.88775 6.97213 7.29618 7.98178 8.48361 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.029359 B = 0.015702 C = 0.010846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.466093 B = 1782.816801 C = 2580.890212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.254 1.254 6 H -0.271 1.271 7 C -0.467 4.467 8 H 0.080 0.920 9 C 0.166 3.834 10 C -0.183 4.183 11 N -0.524 5.524 12 C 0.066 3.934 13 N -0.494 5.494 14 C 0.153 3.847 15 C -0.184 4.184 16 C -0.182 4.182 17 C -0.140 4.140 18 H 0.284 0.716 19 H 0.148 0.852 20 H 0.208 0.792 21 H 0.107 0.893 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.794 -2.983 3.985 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.178 1.178 6 H -0.195 1.195 7 C -0.502 4.502 8 H 0.098 0.902 9 C 0.054 3.946 10 C -0.329 4.329 11 N -0.243 5.243 12 C -0.209 4.209 13 N -0.187 5.187 14 C 0.031 3.969 15 C -0.203 4.203 16 C -0.219 4.219 17 C -0.178 4.178 18 H 0.094 0.906 19 H 0.165 0.835 20 H 0.225 0.775 21 H 0.125 0.875 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.925 -3.290 3.772 11.116 hybrid contribution 0.405 1.084 0.219 1.178 sum 10.330 -2.205 3.991 11.291 Atomic orbital electron populations 1.69864 1.09132 1.29900 1.37566 1.26723 0.95564 1.04358 0.91939 0.84983 0.78813 0.75411 0.79162 1.18828 1.17796 1.19543 1.18621 0.95171 0.89192 1.47196 0.90185 1.19224 0.93601 0.84428 0.97376 1.22742 0.97431 0.91403 1.21356 1.69382 1.28290 1.06614 1.20005 1.24476 0.84910 0.97230 1.14255 1.45320 1.11695 1.05943 1.55696 1.21190 0.81053 1.01912 0.92767 1.22520 0.95547 1.07638 0.94642 1.23034 1.03141 0.93201 1.02476 1.23070 0.96100 0.95895 1.02703 0.90564 0.83522 0.77541 0.87456 0.90582 0.90203 0.88768 0.89265 0.87254 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.34 10.64 21.86 0.23 -46.11 15 2 C 0.03 1.43 5.45 85.28 0.47 1.90 15 3 Si 1.00 38.81 29.57 68.60 2.03 40.84 15 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 5 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 6 H -0.27 -10.22 7.11 99.48 0.71 -9.52 15 7 C -0.47 -25.18 9.07 23.16 0.21 -24.97 15 8 H 0.08 3.99 7.40 -2.91 -0.02 3.97 15 9 C 0.17 9.40 6.69 38.88 0.26 9.66 15 10 C -0.18 -11.20 10.83 84.85 0.92 -10.28 15 11 N -0.52 -29.89 11.18 -196.91 -2.20 -32.09 15 12 C 0.07 3.20 12.51 180.10 2.25 5.45 15 13 N -0.49 -23.41 2.79 -519.73 -1.45 -24.86 15 14 C 0.15 5.36 6.21 86.37 0.54 5.90 15 15 C -0.18 -5.90 6.01 -10.79 -0.06 -5.96 15 16 C -0.18 -5.22 10.18 30.62 0.31 -4.90 15 17 C -0.14 -3.13 10.25 30.62 0.31 -2.81 15 18 H 0.28 14.25 8.30 -92.71 -0.77 13.48 15 19 H 0.15 9.51 6.13 -2.91 -0.02 9.49 15 20 H 0.21 7.83 8.06 -2.91 -0.02 7.80 15 21 H 0.11 2.99 8.13 -2.39 -0.02 2.97 15 22 H 0.08 2.65 7.39 -2.39 -0.02 2.64 15 23 H 0.08 2.96 8.14 -2.38 -0.02 2.94 15 24 H 0.09 2.71 8.03 -2.39 -0.02 2.69 15 25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 26 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 15 Total: -1.00 -67.96 238.71 4.97 -62.99 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 1.15 Total: 25.27 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 5.20 Total: -26.03 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -3.42 Total: -103.07 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -67.96 4.97 -62.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212115679.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.318 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds