Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39914 * 126.20018 * 2 1 4 4 C 1.31646 * 109.21426 * 180.27297 * 3 2 1 5 5 C 1.38668 * 108.82886 * 359.76742 * 4 3 2 6 6 C 1.37395 * 126.19077 * 179.87931 * 2 1 3 7 7 C 1.40235 * 126.66487 * 0.02562 * 6 2 1 8 8 H 1.07997 * 119.99721 * 43.82367 * 7 6 2 9 9 C 1.40163 * 119.99902 * 223.82871 * 7 6 2 10 10 N 1.30766 * 119.99701 * 206.72552 * 9 7 6 11 11 Si 1.86798 * 120.00424 * 26.72743 * 9 7 6 12 12 H 1.48502 * 109.46910 * 265.57472 * 11 9 7 13 13 H 1.48497 * 109.47059 * 25.56774 * 11 9 7 14 14 H 1.48492 * 109.47264 * 145.57310 * 11 9 7 15 15 C 1.51243 * 109.86108 * 180.02562 * 5 4 3 16 16 C 1.54370 * 105.12637 * 17.15632 * 15 5 4 17 17 C 1.51478 * 141.61273 * 179.74772 * 4 3 2 18 18 H 1.09003 * 109.47182 * 268.89285 * 1 2 3 19 19 H 1.09001 * 109.46839 * 28.89339 * 1 2 3 20 20 H 1.08996 * 109.46944 * 148.89091 * 1 2 3 21 21 H 0.96998 * 120.00057 * 180.02562 * 10 9 7 22 22 H 1.08999 * 110.31231 * 136.06828 * 15 5 4 23 23 H 1.08999 * 110.31197 * 258.24535 * 15 5 4 24 24 H 1.09003 * 110.80006 * 91.90129 * 16 15 5 25 25 H 1.08998 * 110.80041 * 215.19740 * 16 15 5 26 26 H 1.09004 * 110.29759 * 43.89271 * 17 4 3 27 27 H 1.08998 * 110.30025 * 281.75828 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1291 0.0000 4 6 3.5504 0.7445 -0.0059 5 6 3.5950 -0.6415 -0.0047 6 6 2.2763 -1.1089 0.0023 7 6 1.8629 -2.4489 0.0047 8 1 1.0592 -2.7671 -0.6427 9 6 2.4928 -3.3751 0.8472 10 7 2.5170 -4.6420 0.5240 11 14 3.2976 -2.8000 2.4317 12 1 4.7420 -2.5522 2.1917 13 1 2.6494 -1.5446 2.8888 14 1 3.1414 -3.8458 3.4743 15 6 5.0333 -1.1093 -0.0108 16 6 5.8588 0.1206 0.4237 17 6 4.9607 1.2972 -0.0139 18 1 -0.3634 -0.0199 1.0275 19 1 -0.3633 0.8998 -0.4966 20 1 -0.3633 -0.8798 -0.5309 21 1 2.9526 -5.2831 1.1072 22 1 5.1686 -1.9257 0.6987 23 1 5.3241 -1.4254 -1.0125 24 1 6.0057 0.1263 1.5038 25 1 6.8166 0.1471 -0.0957 26 1 5.0475 2.1221 0.6933 27 1 5.2316 1.6278 -1.0166 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213813685.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = 47.600299 kcal Electronic energy + Delta-G solvation = -12020.570667 eV Core-core repulsion = 9971.793900 eV Total energy + Delta-G solvation = -2048.776767 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.54105 -37.07321 -35.46817 -32.64774 -31.51071 -28.48367 -26.75471 -26.26365 -22.23202 -20.98912 -19.87230 -18.86346 -17.31562 -16.27800 -16.05814 -15.63096 -14.84227 -14.73855 -14.41601 -13.76334 -13.48412 -13.11787 -13.02067 -12.81252 -12.40223 -12.24850 -11.97678 -11.70849 -11.45626 -11.08476 -10.65027 -9.62399 -8.87055 -8.74963 -6.58620 1.06680 1.27798 1.40871 1.51738 2.07340 2.11175 2.20499 2.92069 3.49213 4.14945 4.25894 4.31803 4.50650 4.59855 4.67940 4.82487 4.95222 5.03367 5.06928 5.16979 5.42607 5.44985 5.50460 5.68448 5.92404 6.27609 6.35667 6.67628 7.01307 7.39650 8.22674 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.021031 C = 0.014577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.536627 B = 1331.078898 C = 1920.386055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.427 5.427 3 N -0.375 5.375 4 C 0.038 3.962 5 C -0.382 4.382 6 C 0.248 3.752 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.088 3.912 10 N -0.840 5.840 11 Si 0.935 3.065 12 H -0.227 1.227 13 H -0.286 1.286 14 H -0.268 1.268 15 C -0.039 4.039 16 C -0.106 4.106 17 C -0.020 4.020 18 H 0.066 0.934 19 H 0.089 0.911 20 H 0.079 0.921 21 H 0.294 0.706 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 5.691 2.063 7.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.213 5.213 3 N -0.198 5.198 4 C -0.126 4.126 5 C -0.394 4.394 6 C 0.126 3.874 7 C -0.546 4.546 8 H 0.081 0.919 9 C -0.130 4.130 10 N -0.467 5.467 11 Si 0.758 3.242 12 H -0.151 1.151 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.077 4.077 16 C -0.143 4.143 17 C -0.059 4.059 18 H 0.084 0.916 19 H 0.108 0.892 20 H 0.097 0.903 21 H 0.105 0.895 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.875 6.479 2.070 7.828 hybrid contribution -0.070 -0.983 0.404 1.065 sum 3.805 5.496 2.474 7.128 Atomic orbital electron populations 1.21572 0.74454 1.03499 1.02592 1.49426 1.06263 1.03048 1.62603 1.76569 1.00926 1.08890 1.33410 1.23483 0.94457 0.96084 0.98551 1.21241 0.94602 0.94919 1.28659 1.18255 0.88872 0.87654 0.92643 1.18085 1.21350 0.89588 1.25544 0.91866 1.26159 0.92639 0.93808 1.00378 1.69706 1.35795 1.04302 1.36938 0.86066 0.81834 0.77909 0.78368 1.15084 1.21178 1.19378 1.20429 0.89165 0.98053 1.00010 1.22355 0.98209 0.92271 1.01504 1.20565 0.84198 0.98147 1.03012 0.91597 0.89229 0.90265 0.89547 0.93330 0.92725 0.91172 0.87292 0.89602 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.72 11.29 127.77 1.44 6.16 15 2 N -0.43 -21.52 4.09 -360.72 -1.47 -23.00 15 3 N -0.38 -18.73 12.55 -47.11 -0.59 -19.32 15 4 C 0.04 1.75 8.05 42.94 0.35 2.09 15 5 C -0.38 -19.06 5.29 -19.18 -0.10 -19.17 15 6 C 0.25 13.42 5.51 39.16 0.22 13.63 15 7 C -0.51 -28.88 9.22 23.22 0.21 -28.66 15 8 H 0.06 3.79 7.96 -2.91 -0.02 3.76 15 9 C 0.09 4.74 5.42 85.32 0.46 5.20 15 10 N -0.84 -45.50 13.92 21.87 0.30 -45.19 15 11 Si 0.93 43.00 25.59 68.60 1.76 44.75 15 12 H -0.23 -9.58 5.27 99.48 0.52 -9.06 15 13 H -0.29 -14.37 7.11 99.48 0.71 -13.66 15 14 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 15 C -0.04 -1.59 6.49 30.49 0.20 -1.40 15 16 C -0.11 -3.25 7.07 31.52 0.22 -3.03 15 17 C -0.02 -0.67 6.77 30.55 0.21 -0.46 15 18 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 19 H 0.09 3.02 8.14 -2.39 -0.02 3.00 15 20 H 0.08 3.03 7.78 -2.39 -0.02 3.01 15 21 H 0.29 14.27 8.29 -92.71 -0.77 13.50 15 22 H 0.05 2.08 4.66 -2.39 -0.01 2.07 15 23 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.09 2.47 8.14 -2.39 -0.02 2.46 15 27 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 Total: -1.00 -66.38 226.43 4.18 -62.20 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.98 Total: 6.18 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.21 Total: -25.62 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -1.76 Total: -87.51 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.76 Total: 44.75 kcal Total: -66.38 4.18 -62.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213813685.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.798 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds