Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28452 * 124.85443 * 2 1 4 4 C 1.32787 * 109.91935 * 180.25343 * 3 2 1 5 5 C 1.41427 * 126.62252 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99505 * 180.02562 * 5 4 3 7 7 C 1.39853 * 119.99824 * 0.02899 * 5 4 3 8 8 N 1.30892 * 120.00115 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47332 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47098 * 120.00206 * 9 7 5 12 12 H 1.48498 * 109.47246 * 239.99953 * 9 7 5 13 13 C 1.42123 * 106.75589 * 0.02562 * 4 3 2 14 14 C 1.34756 * 105.83060 * 0.02562 * 13 4 3 15 15 C 1.51262 * 110.19123 * 179.97438 * 14 13 4 16 16 C 1.54483 * 105.03395 * 16.82571 * 15 14 13 17 17 C 1.50959 * 143.59082 * 180.02562 * 13 4 3 18 18 H 1.08999 * 109.47154 * 269.69429 * 1 2 3 19 19 H 1.09008 * 109.47256 * 29.69288 * 1 2 3 20 20 H 1.08994 * 109.47465 * 149.69096 * 1 2 3 21 21 H 0.97000 * 119.99574 * 180.02562 * 8 7 5 22 22 H 1.09000 * 110.33386 * 135.71851 * 15 14 13 23 23 H 1.09004 * 110.32846 * 257.83729 * 15 14 13 24 24 H 1.08998 * 110.94081 * 92.66775 * 16 15 14 25 25 H 1.08994 * 110.94146 * 216.35372 * 16 15 14 26 26 H 1.09001 * 110.34276 * 44.37925 * 17 13 4 27 27 H 1.08999 * 110.43802 * 282.15742 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1991 1.0541 0.0000 4 6 3.4821 0.7119 -0.0055 5 6 4.5898 1.5912 -0.0078 6 1 5.5942 1.1942 -0.0128 7 6 4.3844 2.9745 -0.0035 8 7 3.1671 3.4554 0.0031 9 14 5.8475 4.1359 -0.0059 10 1 7.1057 3.3471 -0.0131 11 1 5.7956 4.9951 -1.2160 12 1 5.8044 4.9888 1.2089 13 6 3.5272 -0.7086 -0.0099 14 6 2.2431 -1.1173 -0.0072 15 6 2.1761 -2.6284 -0.0121 16 6 3.5864 -3.0934 0.4137 17 6 4.4614 -1.8945 -0.0163 18 1 -0.3633 -0.0055 1.0276 19 1 -0.3634 0.8928 -0.5091 20 1 -0.3634 -0.8871 -0.5186 21 1 3.0247 4.4149 0.0057 22 1 1.4306 -2.9768 0.7027 23 1 1.9410 -2.9937 -1.0118 24 1 3.6373 -3.2462 1.4917 25 1 3.8760 -3.9983 -0.1206 26 1 5.2719 -1.7422 0.6965 27 1 4.8628 -2.0574 -1.0165 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213813767.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = 78.169789 kcal Electronic energy + Delta-G solvation = -11797.207691 eV Core-core repulsion = 9749.756516 eV Total energy + Delta-G solvation = -2047.451175 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.63982 -35.66599 -33.42980 -31.25479 -27.55697 -27.12343 -26.60903 -23.57652 -20.83291 -19.18193 -18.29768 -16.20614 -15.37030 -15.11657 -14.37874 -14.02117 -12.93957 -12.44674 -12.13040 -11.99387 -11.81130 -11.68130 -11.04580 -10.97252 -10.56619 -10.39523 -10.37456 -10.18906 -9.61594 -9.07214 -8.32761 -7.26511 -6.99120 -6.18638 -4.02339 3.20474 3.30093 3.35512 3.50743 4.05666 4.28770 4.47709 5.23889 5.45516 5.54472 5.57590 5.73486 5.96120 6.07589 6.08892 6.13003 6.26967 6.38937 6.57716 6.82641 6.87254 7.33945 7.55499 7.60850 8.02455 8.48789 8.81007 9.12394 9.38618 10.41098 10.80099 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.046068 B = 0.012852 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.649044 B = 2178.202859 C = 2748.472493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.321 5.321 3 N -0.322 5.322 4 C 0.212 3.788 5 C -0.446 4.446 6 H 0.077 0.923 7 C 0.071 3.929 8 N -0.785 5.785 9 Si 0.902 3.098 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.279 1.279 13 C -0.273 4.273 14 C -0.055 4.055 15 C -0.026 4.026 16 C -0.114 4.114 17 C -0.029 4.029 18 H 0.055 0.945 19 H 0.078 0.922 20 H 0.065 0.935 21 H 0.265 0.735 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -8.105 0.051 8.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.104 5.104 3 N -0.153 5.153 4 C 0.063 3.937 5 C -0.486 4.486 6 H 0.096 0.904 7 C -0.146 4.146 8 N -0.415 5.415 9 Si 0.728 3.272 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.286 4.286 14 C -0.181 4.181 15 C -0.065 4.065 16 C -0.153 4.153 17 C -0.067 4.067 18 H 0.073 0.927 19 H 0.096 0.904 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.022 -6.991 0.059 7.616 hybrid contribution 0.980 0.036 -0.006 0.980 sum -2.043 -6.955 0.053 7.249 Atomic orbital electron populations 1.21481 0.77667 1.02532 1.01502 1.44895 1.05215 1.02144 1.58170 1.74856 1.02436 1.06297 1.31732 1.18771 0.90618 0.87962 0.96303 1.18565 0.91768 0.89556 1.48674 0.90443 1.25749 0.96054 0.98890 0.93943 1.69985 1.20677 1.13011 1.37819 0.86366 0.82541 0.80352 0.77918 1.18868 1.20492 1.20488 1.21025 0.93782 0.94789 1.18958 1.21783 0.92871 0.91331 1.12084 1.20321 0.97486 0.88523 1.00204 1.22357 0.94578 0.97731 1.00587 1.20037 0.96132 0.90844 0.99693 0.92691 0.90364 0.91621 0.92402 0.92693 0.91805 0.91659 0.91581 0.92609 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.05 11.32 59.85 0.68 2.73 15 2 N -0.32 -7.99 3.73 -63.53 -0.24 -8.22 15 3 N -0.32 -9.52 10.25 32.32 0.33 -9.19 15 4 C 0.21 6.33 6.78 -84.75 -0.57 5.76 15 5 C -0.45 -13.22 9.42 -37.76 -0.36 -13.58 15 6 H 0.08 2.18 7.84 -52.49 -0.41 1.77 15 7 C 0.07 2.01 5.49 -17.35 -0.10 1.91 15 8 N -0.79 -23.31 11.98 55.54 0.67 -22.65 15 9 Si 0.90 20.78 29.56 -169.99 -5.02 15.75 15 10 H -0.26 -5.93 7.11 56.52 0.40 -5.53 15 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 12 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 13 C -0.27 -6.98 6.99 -104.24 -0.73 -7.71 15 14 C -0.05 -1.27 7.57 -81.63 -0.62 -1.89 15 15 C -0.03 -0.45 6.78 -26.83 -0.18 -0.63 15 16 C -0.11 -1.83 7.14 -25.15 -0.18 -2.01 15 17 C -0.03 -0.57 6.78 -26.95 -0.18 -0.76 15 18 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 19 H 0.08 1.42 8.14 -51.92 -0.42 1.00 15 20 H 0.07 0.98 8.13 -51.93 -0.42 0.56 15 21 H 0.27 7.22 8.30 -40.82 -0.34 6.88 15 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 15 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 234.51 15.07 3.53 3.53 Total: -1.00 -34.02 234.51 -6.32 -40.35 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.35 Total: -3.39 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.24 Total: -16.18 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.76 Total: -40.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -34.02 -6.32 -40.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213813767.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.516 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds