Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28452 * 124.85443 * 2 1 4 4 C 1.32787 * 109.91935 * 180.25343 * 3 2 1 5 5 C 1.41427 * 126.62252 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99505 * 180.02562 * 5 4 3 7 7 C 1.39853 * 119.99824 * 0.02899 * 5 4 3 8 8 N 1.30892 * 120.00115 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47332 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47098 * 120.00206 * 9 7 5 12 12 H 1.48498 * 109.47246 * 239.99953 * 9 7 5 13 13 C 1.42123 * 106.75589 * 0.02562 * 4 3 2 14 14 C 1.34756 * 105.83060 * 0.02562 * 13 4 3 15 15 C 1.51262 * 110.19123 * 179.97438 * 14 13 4 16 16 C 1.54483 * 105.03395 * 16.82571 * 15 14 13 17 17 C 1.50959 * 143.59082 * 180.02562 * 13 4 3 18 18 H 1.08999 * 109.47154 * 269.69429 * 1 2 3 19 19 H 1.09008 * 109.47256 * 29.69288 * 1 2 3 20 20 H 1.08994 * 109.47465 * 149.69096 * 1 2 3 21 21 H 0.97000 * 119.99574 * 180.02562 * 8 7 5 22 22 H 1.09000 * 110.33386 * 135.71851 * 15 14 13 23 23 H 1.09004 * 110.32846 * 257.83729 * 15 14 13 24 24 H 1.08998 * 110.94081 * 92.66775 * 16 15 14 25 25 H 1.08994 * 110.94146 * 216.35372 * 16 15 14 26 26 H 1.09001 * 110.34276 * 44.37925 * 17 13 4 27 27 H 1.08999 * 110.43802 * 282.15742 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1991 1.0541 0.0000 4 6 3.4821 0.7119 -0.0055 5 6 4.5898 1.5912 -0.0078 6 1 5.5942 1.1942 -0.0128 7 6 4.3844 2.9745 -0.0035 8 7 3.1671 3.4554 0.0031 9 14 5.8475 4.1359 -0.0059 10 1 7.1057 3.3471 -0.0131 11 1 5.7956 4.9951 -1.2160 12 1 5.8044 4.9888 1.2089 13 6 3.5272 -0.7086 -0.0099 14 6 2.2431 -1.1173 -0.0072 15 6 2.1761 -2.6284 -0.0121 16 6 3.5864 -3.0934 0.4137 17 6 4.4614 -1.8945 -0.0163 18 1 -0.3633 -0.0055 1.0276 19 1 -0.3634 0.8928 -0.5091 20 1 -0.3634 -0.8871 -0.5186 21 1 3.0247 4.4149 0.0057 22 1 1.4306 -2.9768 0.7027 23 1 1.9410 -2.9937 -1.0118 24 1 3.6373 -3.2462 1.4917 25 1 3.8760 -3.9983 -0.1206 26 1 5.2719 -1.7422 0.6965 27 1 4.8628 -2.0574 -1.0165 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213813767.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = 55.293419 kcal Electronic energy + Delta-G solvation = -11798.199685 eV Core-core repulsion = 9749.756516 eV Total energy + Delta-G solvation = -2048.443169 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50677 -37.22557 -35.48322 -33.12011 -29.28149 -28.90856 -28.30927 -25.42340 -22.44377 -20.99890 -20.16403 -18.11700 -17.23618 -16.73715 -16.24457 -15.52446 -14.80665 -14.09826 -13.57383 -13.52752 -13.46486 -13.25545 -12.83979 -12.73090 -12.47100 -12.12158 -11.82991 -11.71181 -11.50464 -11.10781 -10.32298 -9.30120 -8.84252 -8.28705 -6.20391 1.38012 1.40168 1.56752 1.71974 2.32310 2.39216 2.42838 3.61161 3.74819 4.05370 4.16660 4.31313 4.48998 4.62842 4.65632 4.81916 4.91440 5.02914 5.12510 5.26683 5.37736 5.49950 5.58112 5.73848 6.07031 6.46409 6.89754 7.02448 7.25780 8.38778 8.72290 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.046068 B = 0.012852 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.649044 B = 2178.202859 C = 2748.472493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.335 5.335 3 N -0.366 5.366 4 C 0.163 3.837 5 C -0.485 4.485 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.828 5.828 9 Si 0.986 3.014 10 H -0.256 1.256 11 H -0.270 1.270 12 H -0.270 1.270 13 C -0.321 4.321 14 C -0.044 4.044 15 C -0.021 4.021 16 C -0.100 4.100 17 C -0.031 4.031 18 H 0.072 0.928 19 H 0.071 0.929 20 H 0.107 0.893 21 H 0.270 0.730 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.049 0.951 27 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 -10.047 0.057 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.119 5.119 3 N -0.198 5.198 4 C 0.013 3.987 5 C -0.524 4.524 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.459 5.459 9 Si 0.807 3.193 10 H -0.180 1.180 11 H -0.195 1.195 12 H -0.195 1.195 13 C -0.333 4.333 14 C -0.171 4.171 15 C -0.060 4.060 16 C -0.137 4.137 17 C -0.070 4.070 18 H 0.090 0.910 19 H 0.090 0.910 20 H 0.126 0.874 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.068 0.932 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.077 -8.953 0.067 9.468 hybrid contribution 0.880 0.556 -0.014 1.041 sum -2.197 -8.398 0.053 8.681 Atomic orbital electron populations 1.21863 0.74514 1.04315 1.03193 1.45375 1.07218 1.01992 1.57330 1.74684 1.03195 1.09146 1.32765 1.19311 0.91069 0.90625 0.97672 1.18916 0.92033 0.90981 1.50421 0.90645 1.26744 0.99479 1.00349 0.92879 1.70120 1.23202 1.13570 1.38969 0.85111 0.78300 0.77543 0.78317 1.17967 1.19534 1.19544 1.21675 0.96989 0.94358 1.20255 1.22783 0.91812 0.93890 1.08641 1.20573 0.99203 0.83613 1.02632 1.22379 0.92449 0.97144 1.01774 1.20184 0.96020 0.90671 1.00094 0.90982 0.91002 0.87437 0.92027 0.89689 0.89305 0.90697 0.87406 0.93196 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.62 11.32 127.77 1.45 5.07 15 2 N -0.34 -16.68 3.73 -354.92 -1.32 -18.00 15 3 N -0.37 -22.41 10.25 -51.66 -0.53 -22.94 15 4 C 0.16 10.11 6.78 40.75 0.28 10.39 15 5 C -0.48 -30.04 9.42 23.45 0.22 -29.82 15 6 H 0.08 4.46 7.84 -2.91 -0.02 4.43 15 7 C 0.02 1.07 5.49 85.22 0.47 1.54 15 8 N -0.83 -51.11 11.98 21.81 0.26 -50.85 15 9 Si 0.99 43.90 29.56 68.60 2.03 45.93 15 10 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 13 C -0.32 -16.60 6.99 -19.62 -0.14 -16.74 15 14 C -0.04 -2.00 7.57 41.27 0.31 -1.69 15 15 C -0.02 -0.64 6.78 30.53 0.21 -0.43 15 16 C -0.10 -2.77 7.14 31.62 0.23 -2.54 15 17 C -0.03 -1.22 6.78 30.45 0.21 -1.01 15 18 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 19 H 0.07 2.60 8.14 -2.38 -0.02 2.58 15 20 H 0.11 2.86 8.13 -2.39 -0.02 2.84 15 21 H 0.27 15.21 8.30 -92.71 -0.77 14.44 15 22 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 Total: -1.00 -78.60 234.51 4.82 -73.79 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.15 Total: 7.30 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 3.23 Total: -35.22 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -1.59 Total: -91.80 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -78.60 4.82 -73.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213813767.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.079 kcal (2) G-P(sol) polarization free energy of solvation -78.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds