Wall clock time and date at job start Mon Mar 30 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86800 * 119.99464 * 2 1 4 4 H 1.48495 * 109.47606 * 273.88989 * 3 2 1 5 5 H 1.48495 * 109.47328 * 33.89897 * 3 2 1 6 6 H 1.48506 * 109.46513 * 153.89025 * 3 2 1 7 7 C 1.40069 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99610 * 190.46335 * 7 2 1 9 9 C 1.40059 * 119.99956 * 10.46090 * 7 2 1 10 10 C 1.39777 * 127.13101 * 7.33835 * 9 7 2 11 11 N 1.33131 * 107.51017 * 180.02562 * 10 9 7 12 12 C 1.30783 * 110.02574 * 359.97438 * 11 10 9 13 13 N 1.35496 * 109.37616 * 0.06466 * 12 11 10 14 14 C 1.46449 * 124.99140 * 179.86204 * 13 12 11 15 15 C 1.53257 * 108.79838 * 342.97879 * 14 13 12 16 16 C 1.53257 * 109.45771 * 50.28399 * 15 14 13 17 17 C 1.51189 * 126.87568 * 180.02562 * 12 11 10 18 18 H 0.97000 * 120.00733 * 359.97438 * 1 2 3 19 19 H 1.08001 * 126.24490 * 0.02992 * 10 9 7 20 20 H 1.09000 * 109.58176 * 102.77671 * 14 13 12 21 21 H 1.09001 * 109.57935 * 223.18382 * 14 13 12 22 22 H 1.08998 * 109.47805 * 170.26751 * 15 14 13 23 23 H 1.09003 * 109.47862 * 290.27933 * 15 14 13 24 24 H 1.09008 * 109.55527 * 170.53349 * 16 15 14 25 25 H 1.09001 * 109.51063 * 50.37112 * 16 15 14 26 26 H 1.09005 * 109.71363 * 283.61268 * 17 12 11 27 27 H 1.09003 * 109.71364 * 44.19344 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4077 2.0941 -1.3968 5 1 1.4835 2.6275 0.7808 6 1 3.5787 1.4179 0.6162 7 6 2.0090 -1.2130 -0.0005 8 1 3.0755 -1.2208 0.1693 9 6 1.3261 -2.4158 -0.2213 10 6 -0.0121 -2.5701 -0.5944 11 7 -0.2517 -3.8758 -0.6952 12 6 0.8315 -4.5529 -0.4151 13 7 1.8343 -3.6927 -0.1146 14 6 3.1962 -4.0859 0.2532 15 6 3.1918 -5.5650 0.6547 16 6 2.4843 -6.3860 -0.4289 17 6 0.9863 -6.0569 -0.4132 18 1 -0.4851 0.8400 0.0004 19 1 -0.7220 -1.7752 -0.7690 20 1 3.8610 -3.9405 -0.5983 21 1 3.5371 -3.4804 1.0929 22 1 4.2182 -5.9151 0.7634 23 1 2.6653 -5.6829 1.6018 24 1 2.6254 -7.4488 -0.2318 25 1 2.9018 -6.1376 -1.4046 26 1 0.5276 -6.4726 0.4840 27 1 0.5085 -6.4768 -1.2984 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213813928.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:37 Heat of formation + Delta-G solvation = 13.474357 kcal Electronic energy + Delta-G solvation = -11888.707849 eV Core-core repulsion = 9838.451270 eV Total energy + Delta-G solvation = -2050.256579 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.11943 -37.10668 -35.50497 -33.64505 -30.17410 -29.97052 -26.73515 -24.45119 -22.55421 -21.89036 -19.46832 -18.96398 -17.28734 -16.37030 -16.08878 -15.15612 -14.94323 -14.72725 -14.51365 -14.35148 -13.42220 -13.06892 -12.90169 -12.65022 -12.45932 -12.05527 -11.87870 -11.74724 -11.56111 -11.18148 -10.23468 -9.96926 -8.85729 -8.57429 -6.25674 1.28168 1.39272 1.54914 1.84718 2.19375 2.60555 2.70551 3.34817 3.80142 3.90691 4.01790 4.08061 4.47266 4.58653 4.75655 4.93265 4.99702 5.03646 5.09234 5.11059 5.20176 5.37958 5.66245 5.80780 6.04289 6.50236 6.85716 6.94106 7.26592 7.98125 8.44398 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.059882 B = 0.011855 C = 0.010121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.471550 B = 2361.279132 C = 2765.811433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.027 3.973 3 Si 1.004 2.996 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.479 4.479 8 H 0.079 0.921 9 C 0.156 3.844 10 C -0.182 4.182 11 N -0.524 5.524 12 C 0.088 3.912 13 N -0.497 5.497 14 C 0.110 3.890 15 C -0.120 4.120 16 C -0.111 4.111 17 C -0.015 4.015 18 H 0.286 0.714 19 H 0.151 0.849 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.117 0.883 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.860 -6.411 1.344 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.187 4.187 3 Si 0.824 3.176 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.514 4.514 8 H 0.097 0.903 9 C 0.043 3.957 10 C -0.328 4.328 11 N -0.243 5.243 12 C -0.168 4.168 13 N -0.190 5.190 14 C -0.012 4.012 15 C -0.158 4.158 16 C -0.149 4.149 17 C -0.054 4.054 18 H 0.096 0.904 19 H 0.168 0.832 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.135 0.865 23 H 0.083 0.917 24 H 0.129 0.871 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.008 -6.697 1.168 10.504 hybrid contribution 0.475 1.491 0.146 1.572 sum 8.484 -5.206 1.314 10.040 Atomic orbital electron populations 1.69849 1.09212 1.30075 1.37198 1.26798 0.95634 1.04510 0.91732 0.84872 0.78633 0.74882 0.79218 1.18927 1.19273 1.17750 1.18684 0.95510 0.89570 1.47592 0.90288 1.19161 0.93740 0.84308 0.98447 1.22843 0.96867 0.91333 1.21736 1.69181 1.28010 1.06321 1.20831 1.23428 0.84637 0.95169 1.13587 1.45245 1.11036 1.05645 1.57094 1.21828 0.80879 0.98175 1.00355 1.21873 1.03554 0.91171 0.99174 1.21625 0.92660 1.01627 0.98950 1.20055 0.98528 0.84049 1.02730 0.90390 0.83208 0.91161 0.91122 0.86462 0.91721 0.87123 0.92067 0.90448 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.04 10.60 21.86 0.23 -46.81 15 2 C 0.03 1.42 5.45 85.28 0.47 1.89 15 3 Si 1.00 39.47 29.57 68.60 2.03 41.50 15 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 15 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.48 -26.83 9.14 23.16 0.21 -26.62 15 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 15 9 C 0.16 9.22 6.72 39.01 0.26 9.48 15 10 C -0.18 -11.45 10.85 84.87 0.92 -10.52 15 11 N -0.52 -30.82 11.17 -183.95 -2.05 -32.88 15 12 C 0.09 4.37 7.64 138.06 1.06 5.43 15 13 N -0.50 -24.80 3.18 -504.31 -1.60 -26.40 15 14 C 0.11 4.01 6.73 86.48 0.58 4.59 15 15 C -0.12 -3.14 5.95 30.77 0.18 -2.95 15 16 C -0.11 -2.83 5.96 30.81 0.18 -2.64 15 17 C -0.01 -0.51 6.33 30.13 0.19 -0.32 15 18 H 0.29 14.47 8.30 -92.71 -0.77 13.70 15 19 H 0.15 9.93 6.06 -2.91 -0.02 9.91 15 20 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 23 H 0.06 1.76 8.12 -2.39 -0.02 1.74 15 24 H 0.11 1.93 8.14 -2.38 -0.02 1.91 15 25 H 0.06 1.61 8.12 -2.39 -0.02 1.59 15 26 H 0.08 2.49 8.14 -2.38 -0.02 2.47 15 27 H 0.08 2.62 8.14 -2.39 -0.02 2.61 15 Total: -1.00 -72.50 227.89 3.81 -68.68 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.16 Total: 17.59 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.05 Total: -21.68 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.42 Total: -106.09 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -72.50 3.81 -68.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213813928.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.158 kcal (2) G-P(sol) polarization free energy of solvation -72.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds