Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34502 * 125.67772 * 2 1 4 4 C 1.39281 * 107.18788 * 180.13997 * 3 2 1 5 5 C 1.41591 * 126.55669 * 179.89527 * 4 3 2 6 6 H 1.08001 * 119.99581 * 163.72681 * 5 4 3 7 7 C 1.39698 * 120.00129 * 343.72721 * 5 4 3 8 8 N 1.31023 * 119.99895 * 332.15362 * 7 5 4 9 9 Si 1.86798 * 119.99874 * 152.15505 * 7 5 4 10 10 H 1.48504 * 109.47301 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47058 * 120.00026 * 9 7 5 12 12 H 1.48508 * 109.46965 * 239.99984 * 9 7 5 13 13 C 1.41885 * 106.88071 * 359.62947 * 4 3 2 14 14 C 1.50700 * 125.97294 * 180.18967 * 13 4 3 15 15 C 1.53003 * 117.49999 * 188.62265 * 14 13 4 16 16 C 1.53003 * 117.49685 * 119.99996 * 14 13 4 17 17 N 1.30313 * 108.04971 * 0.23179 * 13 4 3 18 18 H 1.09000 * 109.46817 * 270.29885 * 1 2 3 19 19 H 1.09001 * 109.47121 * 30.29527 * 1 2 3 20 20 H 1.08990 * 109.47614 * 150.30097 * 1 2 3 21 21 H 1.07995 * 126.40538 * 359.97438 * 3 2 1 22 22 H 0.97002 * 120.00067 * 354.28984 * 8 7 5 23 23 H 1.09006 * 115.55126 * 334.33332 * 14 13 4 24 24 H 1.08999 * 117.49530 * 0.02562 * 15 14 13 25 25 H 1.09003 * 117.49739 * 145.02442 * 15 14 13 26 26 H 1.09003 * 117.50005 * 214.97860 * 16 14 13 27 27 H 1.08993 * 117.49897 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0926 0.0000 4 6 3.5704 0.6509 -0.0033 5 6 4.7309 1.4621 -0.0065 6 1 5.6885 1.0356 0.2533 7 6 4.6372 2.8140 -0.3457 8 7 3.6886 3.2230 -1.1517 9 14 5.8643 4.0386 0.3499 10 1 6.8285 3.3287 1.2283 11 1 6.5971 4.6921 -0.7641 12 1 5.1423 5.0688 1.1392 13 6 3.5306 -0.7674 0.0036 14 6 4.7249 -1.6865 0.0071 15 6 4.4663 -3.1817 -0.1890 16 6 4.8717 -2.6495 1.1870 17 7 2.2807 -1.1362 0.0054 18 1 -0.3633 0.0054 1.0277 19 1 -0.3633 0.8873 -0.5184 20 1 -0.3634 -0.8926 -0.5091 21 1 1.9173 2.1202 -0.0004 22 1 3.1030 2.5779 -1.5782 23 1 5.6378 -1.2728 -0.4215 24 1 3.4323 -3.5005 -0.3210 25 1 5.2090 -3.7520 -0.7468 26 1 5.8812 -2.8697 1.5344 27 1 4.1048 -2.6179 1.9608 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213814015.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = 68.275308 kcal Electronic energy + Delta-G solvation = -11640.326323 eV Core-core repulsion = 9592.446091 eV Total energy + Delta-G solvation = -2047.880232 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.44237 -37.82354 -35.72207 -33.35871 -30.40187 -28.30342 -26.14271 -23.61190 -23.20090 -21.73610 -19.99118 -19.27845 -17.13767 -16.16995 -15.94231 -15.73548 -15.31442 -14.97604 -14.15239 -13.50361 -13.39696 -13.24605 -12.70405 -12.46521 -12.32860 -11.90982 -11.72346 -11.55711 -11.45401 -11.08062 -10.52855 -9.64318 -9.23367 -8.93881 -6.04014 1.23634 1.53277 1.56322 1.84669 2.08250 2.18159 2.48335 3.07354 3.40208 3.81324 3.95583 4.09701 4.29647 4.44551 4.53219 4.54806 4.60511 4.76953 4.95864 5.13904 5.30314 5.31438 5.52598 5.77450 6.10736 6.19302 6.63000 6.92713 7.13775 7.33888 8.34540 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.014251 C = 0.010370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.693629 B = 1964.252325 C = 2699.460141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.390 5.390 3 C -0.120 4.120 4 C -0.056 4.056 5 C -0.546 4.546 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.857 5.857 9 Si 1.118 2.882 10 H -0.268 1.268 11 H -0.273 1.273 12 H -0.273 1.273 13 C 0.025 3.975 14 C -0.085 4.085 15 C -0.154 4.154 16 C -0.155 4.155 17 N -0.323 5.323 18 H 0.073 0.927 19 H 0.090 0.910 20 H 0.089 0.911 21 H 0.145 0.855 22 H 0.274 0.726 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -5.398 2.672 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.179 5.179 3 C -0.261 4.261 4 C -0.066 4.066 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.214 4.214 8 N -0.485 5.485 9 Si 0.937 3.063 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.198 1.198 13 C -0.140 4.140 14 C -0.105 4.105 15 C -0.191 4.191 16 C -0.193 4.193 17 N -0.148 5.148 18 H 0.091 0.909 19 H 0.108 0.892 20 H 0.108 0.892 21 H 0.162 0.838 22 H 0.085 0.915 23 H 0.127 0.873 24 H 0.103 0.897 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.987 -4.708 2.689 5.511 hybrid contribution -0.317 -0.621 -0.245 0.739 sum -1.304 -5.329 2.444 6.006 Atomic orbital electron populations 1.21807 0.73716 1.04418 1.03171 1.47695 1.06343 1.02722 1.61101 1.22365 0.91196 0.91626 1.20905 1.18426 0.93255 0.91663 1.03212 1.19776 0.94303 0.96620 1.47191 0.91924 1.28038 1.00394 1.00161 0.92760 1.70618 1.17519 1.39748 1.20611 0.82990 0.73570 0.73227 0.76472 1.19197 1.19842 1.19779 1.21817 0.92162 0.93807 1.06226 1.20106 0.94636 0.89766 1.06042 1.22957 1.02719 0.93858 0.99552 1.22975 1.03196 1.01929 0.91188 1.76154 1.02239 1.09859 1.26505 0.90880 0.89178 0.89201 0.83771 0.91474 0.87265 0.89672 0.86060 0.86010 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.63 11.44 127.77 1.46 5.09 15 2 N -0.39 -18.39 3.98 -366.49 -1.46 -19.84 15 3 C -0.12 -6.42 9.62 84.54 0.81 -5.60 15 4 C -0.06 -3.16 5.59 -21.30 -0.12 -3.28 15 5 C -0.55 -31.21 9.06 23.45 0.21 -31.00 15 6 H 0.06 3.51 7.98 -2.91 -0.02 3.49 15 7 C 0.00 -0.18 5.22 85.17 0.44 0.27 15 8 N -0.86 -48.97 12.61 21.79 0.27 -48.69 15 9 Si 1.12 46.63 30.01 68.60 2.06 48.69 15 10 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 12 H -0.27 -10.95 7.11 99.48 0.71 -10.25 15 13 C 0.03 1.30 6.81 43.69 0.30 1.60 15 14 C -0.09 -3.56 6.05 -11.54 -0.07 -3.63 15 15 C -0.15 -5.03 10.14 30.60 0.31 -4.72 15 16 C -0.15 -5.16 10.23 30.60 0.31 -4.85 15 17 N -0.32 -15.92 12.05 -46.36 -0.56 -16.47 15 18 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 19 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 20 H 0.09 2.61 8.14 -2.39 -0.02 2.59 15 21 H 0.14 7.81 6.96 -2.91 -0.02 7.79 15 22 H 0.27 16.24 6.55 -92.71 -0.61 15.63 15 23 H 0.11 4.58 8.14 -2.38 -0.02 4.56 15 24 H 0.08 2.97 7.90 -2.39 -0.02 2.95 15 25 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 26 H 0.12 3.27 8.14 -2.39 -0.02 3.25 15 27 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 Total: -1.00 -67.01 240.50 5.29 -61.71 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.32 Total: 20.73 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 3.66 Total: -46.12 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.74 Total: -85.01 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.06 Total: 48.69 kcal Total: -67.01 5.29 -61.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213814015.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.990 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds