Wall clock time and date at job start Mon Mar 30 2020 02:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46870 * 2 1 4 4 C 1.50696 * 109.47710 * 120.00148 * 2 1 3 5 5 N 1.31960 * 120.61067 * 300.26520 * 4 2 1 6 6 C 1.31989 * 121.08400 * 180.30623 * 5 4 2 7 7 N 1.32009 * 122.36696 * 359.68408 * 6 5 4 8 8 C 1.31936 * 121.08683 * 0.02562 * 7 6 5 9 9 C 1.41071 * 120.61177 * 119.99830 * 4 2 1 10 10 C 1.41420 * 121.04358 * 0.02562 * 9 4 2 11 11 H 1.08005 * 120.00199 * 25.83361 * 10 9 4 12 12 C 1.39961 * 120.00082 * 205.82472 * 10 9 4 13 13 N 1.30821 * 119.99643 * 15.02239 * 12 10 9 14 14 Si 1.86792 * 119.99990 * 195.02017 * 12 10 9 15 15 H 1.48499 * 109.47495 * 265.18814 * 14 12 10 16 16 H 1.48500 * 109.47493 * 25.19261 * 14 12 10 17 17 H 1.48504 * 109.46942 * 145.19303 * 14 12 10 18 18 H 1.08999 * 109.46818 * 299.99170 * 1 2 3 19 19 H 1.08999 * 109.47784 * 59.99617 * 1 2 3 20 20 H 1.09003 * 109.46865 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46818 * 240.00830 * 2 1 3 22 22 H 1.08998 * 109.47682 * 300.00449 * 3 2 1 23 23 H 1.09000 * 109.47035 * 60.00331 * 3 2 1 24 24 H 1.09003 * 109.47330 * 179.97438 * 3 2 1 25 25 H 1.07998 * 118.81393 * 179.69430 * 6 5 4 26 26 H 1.07997 * 120.61632 * 179.97438 * 8 7 6 27 27 H 0.97001 * 119.99533 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 7 1.7169 -0.2731 2.4347 6 6 2.1567 -0.8845 3.5186 7 7 2.9225 -1.9583 3.4627 8 6 3.2878 -2.4750 2.3050 9 6 2.8443 -1.8584 1.1158 10 6 3.2075 -2.3713 -0.1510 11 1 3.2437 -1.7160 -1.0088 12 6 3.5203 -3.7281 -0.2932 13 7 3.2011 -4.5753 0.6511 14 14 4.3933 -4.3291 -1.8313 15 1 3.3901 -4.8179 -2.8110 16 1 5.1665 -3.2116 -2.4303 17 1 5.3176 -5.4356 -1.4755 18 1 -0.3633 0.5137 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5137 -0.8901 22 1 1.6766 1.9565 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.8799 -0.4923 4.4860 26 1 3.9149 -3.3534 2.2681 27 1 3.4175 -5.5157 0.5523 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213814188.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:33 Heat of formation + Delta-G solvation = -2.617720 kcal Electronic energy + Delta-G solvation = -11801.993595 eV Core-core repulsion = 9751.039212 eV Total energy + Delta-G solvation = -2050.954384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05175 -36.60919 -36.04865 -33.02996 -31.98685 -27.88012 -27.75242 -25.07505 -23.80753 -21.25638 -19.37022 -18.14112 -17.04825 -16.72263 -15.23064 -15.19529 -15.14767 -14.60545 -13.90520 -13.73914 -13.52474 -13.11491 -12.90564 -12.82941 -12.19939 -12.06738 -12.03232 -11.72973 -11.28105 -10.99035 -10.86327 -9.90084 -9.48853 -8.79223 -6.52090 0.68838 0.85741 1.41073 1.50861 1.57716 2.16816 2.70833 3.63028 3.76953 4.02116 4.09388 4.39035 4.48330 4.67884 4.90932 4.95342 5.04993 5.07342 5.08122 5.14387 5.21255 5.49868 5.53007 5.75732 5.83389 6.28422 6.43842 6.64404 6.97982 7.90585 8.18060 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034337 B = 0.015175 C = 0.011590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.255169 B = 1844.725695 C = 2415.372956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.125 4.125 4 C 0.044 3.956 5 N -0.498 5.498 6 C 0.115 3.885 7 N -0.526 5.526 8 C 0.041 3.959 9 C -0.006 4.006 10 C -0.453 4.453 11 H 0.101 0.899 12 C 0.033 3.967 13 N -0.818 5.818 14 Si 0.992 3.008 15 H -0.259 1.259 16 H -0.251 1.251 17 H -0.268 1.268 18 H 0.049 0.951 19 H 0.081 0.919 20 H 0.031 0.969 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.183 0.817 26 H 0.144 0.856 27 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 3.387 -6.135 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.050 4.050 3 C -0.183 4.183 4 C -0.107 4.107 5 N -0.211 5.211 6 C -0.167 4.167 7 N -0.239 5.239 8 C -0.129 4.129 9 C -0.013 4.013 10 C -0.482 4.482 11 H 0.118 0.882 12 C -0.184 4.184 13 N -0.443 5.443 14 Si 0.811 3.189 15 H -0.184 1.184 16 H -0.175 1.175 17 H -0.192 1.192 18 H 0.068 0.932 19 H 0.100 0.900 20 H 0.050 0.950 21 H 0.102 0.898 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.200 0.800 26 H 0.161 0.839 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.687 3.522 -5.077 6.217 hybrid contribution 0.581 -1.053 -0.736 1.410 sum -0.106 2.469 -5.813 6.317 Atomic orbital electron populations 1.21636 0.93883 1.00527 1.02131 1.19884 0.96260 0.95777 0.93121 1.21664 0.99895 0.94540 1.02187 1.21962 0.98274 0.97307 0.93172 1.67482 1.22324 1.31940 0.99349 1.24106 1.01991 0.93682 0.96963 1.67753 1.13207 1.11926 1.31039 1.23208 1.01063 1.01262 0.87356 1.19453 0.91910 0.93816 0.96130 1.19870 1.38898 0.94697 0.94766 0.88157 1.26993 0.93298 0.96356 1.01745 1.69797 1.33854 1.05447 1.35192 0.85029 0.78577 0.78771 0.76518 1.18372 1.17457 1.19211 0.93184 0.90027 0.94985 0.89809 0.90076 0.93190 0.94310 0.80036 0.83898 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 9.10 71.98 0.66 -3.65 15 2 C -0.03 -1.23 3.07 -11.54 -0.04 -1.26 15 3 C -0.13 -4.16 9.11 71.98 0.66 -3.50 15 4 C 0.04 2.16 5.55 43.23 0.24 2.40 15 5 N -0.50 -24.44 10.01 -186.12 -1.86 -26.30 15 6 C 0.12 5.70 12.26 180.76 2.22 7.92 15 7 N -0.53 -28.15 10.41 -197.99 -2.06 -30.21 15 8 C 0.04 2.27 9.98 85.38 0.85 3.13 15 9 C -0.01 -0.34 5.58 -21.10 -0.12 -0.46 15 10 C -0.45 -22.34 8.38 23.47 0.20 -22.14 15 11 H 0.10 4.56 6.38 -2.91 -0.02 4.54 15 12 C 0.03 1.53 5.22 85.26 0.44 1.98 15 13 N -0.82 -40.52 10.97 21.83 0.24 -40.28 15 14 Si 0.99 34.60 29.58 68.60 2.03 36.63 15 15 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 16 H -0.25 -8.46 7.11 99.48 0.71 -7.75 15 17 H -0.27 -9.05 7.11 99.48 0.71 -8.35 15 18 H 0.05 1.78 8.07 -2.39 -0.02 1.76 15 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.08 3.28 5.84 -2.39 -0.01 3.26 15 22 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.05 1.71 8.08 -2.39 -0.02 1.70 15 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 25 H 0.18 7.67 8.06 -2.91 -0.02 7.65 15 26 H 0.14 8.02 6.31 -2.91 -0.02 8.00 15 27 H 0.30 13.14 8.30 -92.71 -0.77 12.37 15 Total: -1.00 -58.40 234.16 4.61 -53.78 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.16 Total: 21.97 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 5.11 Total: -15.59 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -3.69 Total: -96.79 kcal Atomic # 14 Polarization: 34.60 SS G_CDS: 2.03 Total: 36.63 kcal Total: -58.40 4.61 -53.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213814188.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.166 kcal (2) G-P(sol) polarization free energy of solvation -58.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds