Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99887 * 2 1 4 4 C 1.38411 * 110.99447 * 236.04903 * 2 1 3 5 5 C 1.39210 * 121.00096 * 59.99666 * 4 2 1 6 6 C 1.37994 * 119.31946 * 180.02562 * 5 4 2 7 7 N 1.32296 * 121.45949 * 0.02562 * 6 5 4 8 8 C 1.31453 * 122.22220 * 359.97334 * 7 6 5 9 9 C 1.40661 * 120.47003 * 359.72568 * 8 7 6 10 10 C 1.41101 * 120.73749 * 180.28522 * 9 8 7 11 11 H 1.08003 * 119.99571 * 204.34259 * 10 9 8 12 12 C 1.39931 * 120.00222 * 24.33887 * 10 9 8 13 13 N 1.30872 * 119.99990 * 17.41968 * 12 10 9 14 14 Si 1.86801 * 119.99993 * 197.41859 * 12 10 9 15 15 H 1.48500 * 109.47107 * 90.00385 * 14 12 10 16 16 H 1.48503 * 109.47084 * 210.00074 * 14 12 10 17 17 H 1.48501 * 109.47135 * 330.00158 * 14 12 10 18 18 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 19 19 H 1.08999 * 109.47395 * 59.99555 * 1 2 3 20 20 H 1.09002 * 109.46538 * 299.99839 * 1 2 3 21 21 H 1.08992 * 109.47098 * 60.00422 * 3 2 1 22 22 H 1.09002 * 109.46912 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46884 * 300.00188 * 3 2 1 24 24 H 1.07993 * 120.33979 * 359.97438 * 5 4 2 25 25 H 1.07999 * 119.27092 * 180.02562 * 6 5 4 26 26 H 1.07998 * 119.76867 * 179.97438 * 8 7 6 27 27 H 0.97001 * 119.99974 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9649 -0.7217 -1.0719 5 6 1.6647 -0.3578 -2.3816 6 6 2.1774 -1.1023 -3.4243 7 7 2.9480 -2.1555 -3.2071 8 6 3.2688 -2.5514 -1.9953 9 6 2.7991 -1.8521 -0.8688 10 6 3.1448 -2.2685 0.4343 11 1 2.5099 -2.0117 1.2694 12 6 4.3100 -3.0142 0.6445 13 7 5.2444 -3.0403 -0.2714 14 14 4.5318 -3.9725 2.2326 15 1 3.9829 -5.3421 2.0651 16 1 5.9773 -4.0556 2.5628 17 1 3.8118 -3.2816 3.3323 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3632 0.5138 0.8900 21 1 1.6460 1.8947 0.8900 22 1 3.0851 1.3423 -0.0005 23 1 1.6459 1.8948 -0.8900 24 1 1.0364 0.4980 -2.5797 25 1 1.9444 -0.8190 -4.4401 26 1 3.9006 -3.4173 -1.8638 27 1 6.0523 -3.5569 -0.1255 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213814430.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 33.182327 kcal Electronic energy + Delta-G solvation = -11841.813148 eV Core-core repulsion = 9792.411171 eV Total energy + Delta-G solvation = -2049.401977 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.77416 -35.98622 -33.96181 -30.05130 -29.41163 -26.92275 -25.58960 -23.78333 -21.44301 -19.98760 -17.37600 -15.95841 -15.43584 -14.67617 -14.20673 -13.85987 -13.15011 -13.13235 -12.61748 -12.10434 -11.73318 -11.45384 -11.24504 -11.18597 -11.06837 -10.80816 -10.57916 -10.13969 -9.35107 -8.07916 -7.92741 -7.55467 -7.50706 -6.87192 -4.39694 2.69236 2.76144 3.06185 3.10883 3.20775 3.89472 4.63624 4.86015 5.62552 5.81222 5.90293 6.00415 6.06889 6.13417 6.19958 6.37754 6.46011 6.69779 6.93352 7.10141 7.31578 7.38739 7.63470 7.77755 8.08944 8.31954 8.50700 8.72983 8.93128 9.75806 10.08138 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.015268 C = 0.011701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.712305 B = 1833.514783 C = 2392.406270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.479 5.479 3 C 0.038 3.962 4 C -0.016 4.016 5 C -0.162 4.162 6 C -0.047 4.047 7 N -0.481 5.481 8 C 0.050 3.950 9 C 0.082 3.918 10 C -0.417 4.417 11 H 0.092 0.908 12 C 0.069 3.931 13 N -0.788 5.788 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.260 1.260 18 H 0.063 0.937 19 H 0.016 0.984 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.015 0.985 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.152 0.848 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 2.712 2.810 5.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.199 5.199 3 C -0.109 4.109 4 C -0.118 4.118 5 C -0.184 4.184 6 C -0.199 4.199 7 N -0.189 5.189 8 C -0.117 4.117 9 C 0.076 3.924 10 C -0.447 4.447 11 H 0.110 0.890 12 C -0.149 4.149 13 N -0.413 5.413 14 Si 0.739 3.261 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.184 1.184 18 H 0.082 0.918 19 H 0.035 0.965 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.034 0.966 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.169 0.831 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.978 2.003 2.463 4.353 hybrid contribution -0.422 0.631 0.602 0.968 sum -3.400 2.634 3.064 5.281 Atomic orbital electron populations 1.22358 0.88445 1.01502 0.99021 1.58798 1.06041 1.12164 1.42872 1.22314 1.00944 0.88825 0.98822 1.18685 1.07769 0.98138 0.87190 1.21908 1.01630 1.00012 0.94861 1.21443 1.04059 0.97662 0.96765 1.67137 1.11194 1.14184 1.26408 1.23053 1.01959 1.00467 0.86208 1.18449 0.89992 0.88882 0.95066 1.19552 1.05087 1.25720 0.94352 0.89009 1.26106 0.95044 0.95021 0.98751 1.69808 1.05584 1.31450 1.34488 0.86191 0.78078 0.80290 0.81536 1.19158 1.20290 1.18368 0.91844 0.96521 0.92467 0.92524 0.91567 0.96622 0.89025 0.86810 0.83079 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.29 60.07 0.56 1.18 15 2 N -0.48 -10.30 4.29 -186.16 -0.80 -11.10 15 3 C 0.04 0.72 9.33 60.06 0.56 1.28 15 4 C -0.02 -0.40 4.73 -83.11 -0.39 -0.79 15 5 C -0.16 -3.75 8.74 -39.31 -0.34 -4.10 15 6 C -0.05 -1.14 11.15 -17.44 -0.19 -1.34 15 7 N -0.48 -12.72 10.33 -12.68 -0.13 -12.85 15 8 C 0.05 1.35 9.89 -16.80 -0.17 1.19 15 9 C 0.08 2.19 5.60 -106.48 -0.60 1.59 15 10 C -0.42 -10.86 8.75 -37.86 -0.33 -11.20 15 11 H 0.09 2.37 7.65 -52.48 -0.40 1.96 15 12 C 0.07 1.70 5.16 -17.33 -0.09 1.61 15 13 N -0.79 -19.94 10.95 55.55 0.61 -19.33 15 14 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 15 15 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 16 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 18 H 0.06 1.17 8.12 -51.93 -0.42 0.75 15 19 H 0.02 0.28 7.33 -51.93 -0.38 -0.10 15 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.07 1.32 8.12 -51.93 -0.42 0.90 15 23 H 0.02 0.27 7.54 -51.93 -0.39 -0.12 15 24 H 0.09 1.89 7.21 -52.49 -0.38 1.51 15 25 H 0.11 2.42 8.06 -52.49 -0.42 2.00 15 26 H 0.15 4.15 6.15 -52.49 -0.32 3.83 15 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 LS Contribution 233.88 15.07 3.52 3.52 Total: -1.00 -27.94 233.88 -5.94 -33.89 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.12 Total: 3.19 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.00 Total: -10.58 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.32 Total: -43.28 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.94 -5.94 -33.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213814430.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.069 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds