Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99887 * 2 1 4 4 C 1.38411 * 110.99447 * 236.04903 * 2 1 3 5 5 C 1.39210 * 121.00096 * 59.99666 * 4 2 1 6 6 C 1.37994 * 119.31946 * 180.02562 * 5 4 2 7 7 N 1.32296 * 121.45949 * 0.02562 * 6 5 4 8 8 C 1.31453 * 122.22220 * 359.97334 * 7 6 5 9 9 C 1.40661 * 120.47003 * 359.72568 * 8 7 6 10 10 C 1.41101 * 120.73749 * 180.28522 * 9 8 7 11 11 H 1.08003 * 119.99571 * 204.34259 * 10 9 8 12 12 C 1.39931 * 120.00222 * 24.33887 * 10 9 8 13 13 N 1.30872 * 119.99990 * 17.41968 * 12 10 9 14 14 Si 1.86801 * 119.99993 * 197.41859 * 12 10 9 15 15 H 1.48500 * 109.47107 * 90.00385 * 14 12 10 16 16 H 1.48503 * 109.47084 * 210.00074 * 14 12 10 17 17 H 1.48501 * 109.47135 * 330.00158 * 14 12 10 18 18 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 19 19 H 1.08999 * 109.47395 * 59.99555 * 1 2 3 20 20 H 1.09002 * 109.46538 * 299.99839 * 1 2 3 21 21 H 1.08992 * 109.47098 * 60.00422 * 3 2 1 22 22 H 1.09002 * 109.46912 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46884 * 300.00188 * 3 2 1 24 24 H 1.07993 * 120.33979 * 359.97438 * 5 4 2 25 25 H 1.07999 * 119.27092 * 180.02562 * 6 5 4 26 26 H 1.07998 * 119.76867 * 179.97438 * 8 7 6 27 27 H 0.97001 * 119.99974 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9649 -0.7217 -1.0719 5 6 1.6647 -0.3578 -2.3816 6 6 2.1774 -1.1023 -3.4243 7 7 2.9480 -2.1555 -3.2071 8 6 3.2688 -2.5514 -1.9953 9 6 2.7991 -1.8521 -0.8688 10 6 3.1448 -2.2685 0.4343 11 1 2.5099 -2.0117 1.2694 12 6 4.3100 -3.0142 0.6445 13 7 5.2444 -3.0403 -0.2714 14 14 4.5318 -3.9725 2.2326 15 1 3.9829 -5.3421 2.0651 16 1 5.9773 -4.0556 2.5628 17 1 3.8118 -3.2816 3.3323 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3632 0.5138 0.8900 21 1 1.6460 1.8947 0.8900 22 1 3.0851 1.3423 -0.0005 23 1 1.6459 1.8948 -0.8900 24 1 1.0364 0.4980 -2.5797 25 1 1.9444 -0.8190 -4.4401 26 1 3.9006 -3.4173 -1.8638 27 1 6.0523 -3.5569 -0.1255 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213814430.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 15.411184 kcal Electronic energy + Delta-G solvation = -11842.583763 eV Core-core repulsion = 9792.411171 eV Total energy + Delta-G solvation = -2050.172592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61387 -37.71856 -35.84630 -31.94618 -31.27479 -28.36890 -27.48082 -25.48704 -23.34365 -21.78782 -19.28713 -17.73621 -17.23326 -16.45668 -15.76970 -15.65934 -14.90961 -14.76442 -14.34938 -13.97060 -13.30335 -13.09675 -12.93931 -12.74668 -12.60063 -12.55914 -12.37583 -11.85257 -11.17320 -9.99970 -9.85253 -9.49146 -9.13917 -8.70138 -6.34979 0.83076 0.86987 1.42196 1.55991 1.56826 2.22195 2.75353 3.27720 3.68745 4.18830 4.34015 4.45924 4.47808 4.60056 4.70175 4.86225 4.97916 4.99326 5.05687 5.23769 5.35608 5.50164 5.74952 6.17483 6.28102 6.39347 6.60909 6.81939 7.05846 7.79313 8.27094 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.015268 C = 0.011701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.712305 B = 1833.514783 C = 2392.406270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.503 5.503 3 C 0.041 3.959 4 C -0.010 4.010 5 C -0.161 4.161 6 C -0.055 4.055 7 N -0.499 5.499 8 C 0.019 3.981 9 C 0.051 3.949 10 C -0.442 4.442 11 H 0.088 0.912 12 C 0.031 3.969 13 N -0.820 5.820 14 Si 0.989 3.011 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.256 1.256 18 H 0.050 0.950 19 H 0.029 0.971 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.043 0.957 23 H 0.028 0.972 24 H 0.123 0.877 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 3.653 3.746 6.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.223 5.223 3 C -0.106 4.106 4 C -0.112 4.112 5 C -0.183 4.183 6 C -0.208 4.208 7 N -0.208 5.208 8 C -0.146 4.146 9 C 0.045 3.955 10 C -0.471 4.471 11 H 0.106 0.894 12 C -0.185 4.185 13 N -0.445 5.445 14 Si 0.809 3.191 15 H -0.186 1.186 16 H -0.193 1.193 17 H -0.180 1.180 18 H 0.069 0.931 19 H 0.047 0.953 20 H 0.106 0.894 21 H 0.107 0.893 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.141 0.859 25 H 0.161 0.839 26 H 0.153 0.847 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.925 2.944 3.400 5.969 hybrid contribution -0.190 0.449 0.248 0.547 sum -4.114 3.393 3.648 6.461 Atomic orbital electron populations 1.22392 0.86088 1.01423 1.01114 1.58776 1.08153 1.13464 1.41884 1.22323 0.99598 0.87626 1.01011 1.18965 1.06213 0.97352 0.88720 1.22173 1.01446 1.00620 0.94081 1.22006 1.03220 0.96967 0.98617 1.67098 1.12106 1.15376 1.26249 1.22852 1.03686 1.01063 0.86974 1.18787 0.91234 0.90121 0.95340 1.19675 1.05991 1.27450 0.94030 0.89436 1.26954 0.94108 0.95207 1.02201 1.69856 1.06192 1.31999 1.36451 0.85096 0.78373 0.78630 0.77018 1.18584 1.19270 1.17998 0.93094 0.95272 0.89412 0.89334 0.93820 0.95342 0.85867 0.83899 0.84684 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 9.29 127.69 1.19 2.40 15 2 N -0.50 -20.67 4.29 -742.89 -3.19 -23.86 15 3 C 0.04 1.44 9.33 127.69 1.19 2.63 15 4 C -0.01 -0.50 4.73 39.26 0.19 -0.32 15 5 C -0.16 -7.18 8.74 22.45 0.20 -6.98 15 6 C -0.05 -2.58 11.15 84.56 0.94 -1.63 15 7 N -0.50 -26.72 10.33 -194.02 -2.00 -28.72 15 8 C 0.02 1.06 9.89 85.34 0.84 1.90 15 9 C 0.05 2.76 5.60 -21.07 -0.12 2.65 15 10 C -0.44 -23.40 8.75 23.38 0.20 -23.19 15 11 H 0.09 4.56 7.65 -2.91 -0.02 4.53 15 12 C 0.03 1.54 5.16 85.25 0.44 1.98 15 13 N -0.82 -42.38 10.95 21.83 0.24 -42.14 15 14 Si 0.99 37.38 29.59 68.60 2.03 39.41 15 15 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 16 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 18 H 0.05 1.79 8.12 -2.39 -0.02 1.77 15 19 H 0.03 0.89 7.33 -2.39 -0.02 0.87 15 20 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 21 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.04 1.69 8.12 -2.39 -0.02 1.67 15 23 H 0.03 0.91 7.54 -2.39 -0.02 0.89 15 24 H 0.12 4.65 7.21 -2.91 -0.02 4.62 15 25 H 0.14 5.76 8.06 -2.91 -0.02 5.74 15 26 H 0.14 7.80 6.15 -2.91 -0.02 7.79 15 27 H 0.29 13.61 8.30 -92.71 -0.77 12.85 15 Total: -1.00 -60.22 233.88 3.30 -56.91 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.15 Total: 18.96 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 5.07 Total: -20.57 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -4.95 Total: -94.72 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -60.22 3.30 -56.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213814430.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -60.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds