Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47986 * 111.00018 * 2 1 4 4 C 1.54492 * 102.20373 * 265.44329 * 3 2 1 5 5 N 1.47716 * 103.20997 * 334.55436 * 4 3 2 6 6 C 1.36169 * 140.98127 * 196.41648 * 5 4 3 7 7 C 1.39257 * 108.03576 * 179.58131 * 6 5 4 8 8 C 1.41308 * 127.01207 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99874 * 359.86403 * 8 7 6 10 10 C 1.39560 * 119.99956 * 179.86209 * 8 7 6 11 11 N 1.31116 * 119.99568 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99799 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47412 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47322 * 119.99977 * 12 10 8 15 15 H 1.48500 * 109.46963 * 239.99627 * 12 10 8 16 16 C 1.46611 * 105.97687 * 359.93835 * 7 6 5 17 17 C 1.35928 * 106.76247 * 0.18628 * 16 7 6 18 18 H 1.08998 * 109.47027 * 59.87473 * 1 2 3 19 19 H 1.09004 * 109.47390 * 179.87949 * 1 2 3 20 20 H 1.09005 * 109.46976 * 299.87174 * 1 2 3 21 21 H 1.08997 * 110.85480 * 147.26735 * 3 2 1 22 22 H 1.08997 * 111.03510 * 23.70121 * 3 2 1 23 23 H 1.09000 * 110.67073 * 216.12899 * 4 3 2 24 24 H 1.09003 * 110.81861 * 93.05369 * 4 3 2 25 25 H 1.08004 * 125.98315 * 359.55810 * 6 5 4 26 26 H 0.97006 * 119.99931 * 179.97438 * 11 10 8 27 27 H 1.07994 * 126.61714 * 180.20956 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9994 1.3816 0.0000 4 6 2.2284 1.6435 -1.5052 5 7 2.4190 0.2872 -2.0587 6 6 2.8942 -0.3463 -3.1664 7 6 2.7545 -1.7181 -2.9718 8 6 3.1207 -2.7462 -3.8695 9 1 3.5587 -2.4981 -4.8249 10 6 2.9162 -4.0821 -3.5212 11 7 2.3848 -4.3831 -2.3610 12 14 3.4009 -5.4411 -4.7075 13 1 3.9753 -4.8419 -5.9388 14 1 4.4113 -6.3206 -4.0667 15 1 2.2007 -6.2414 -5.0604 16 6 2.1521 -1.8782 -1.6449 17 6 1.9698 -0.6279 -1.1436 18 1 -0.3633 0.5158 -0.8888 19 1 -0.3634 -1.0277 -0.0022 20 1 -0.3633 0.5119 0.8912 21 1 2.9384 1.4368 0.5508 22 1 1.2700 2.0807 0.4089 23 1 3.1207 2.2505 -1.6588 24 1 1.3572 2.1224 -1.9521 25 1 3.3069 0.1316 -4.0427 26 1 2.2423 -5.3117 -2.1191 27 1 1.9018 -2.8097 -1.1592 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213814902.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = 75.425064 kcal Electronic energy + Delta-G solvation = -11795.161706 eV Core-core repulsion = 9747.591511 eV Total energy + Delta-G solvation = -2047.570195 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.33756 -35.77774 -33.11711 -31.24923 -28.13362 -26.93260 -24.79735 -24.46238 -21.31200 -19.10340 -18.09671 -16.51759 -15.66661 -14.91770 -14.70932 -13.93138 -13.30023 -13.06828 -12.56140 -12.29471 -11.94180 -11.39677 -11.25080 -11.09576 -10.80036 -10.70022 -10.64903 -9.85824 -9.41780 -9.14688 -8.46979 -6.97049 -6.32791 -6.24651 -3.86663 3.14578 3.27608 3.32892 3.60485 4.07200 4.24397 4.43561 4.50333 5.08020 5.19872 5.51471 5.68487 5.75015 5.78637 5.88661 6.09800 6.23843 6.52194 7.05636 7.17265 7.43086 7.55914 7.79635 8.13290 8.42804 8.50075 8.99687 9.15026 9.36607 9.39725 10.70648 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.071591 B = 0.010496 C = 0.009471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.016351 B = 2667.091815 C = 2955.568839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.463 5.463 3 C 0.039 3.961 4 C 0.082 3.918 5 N -0.504 5.504 6 C -0.155 4.155 7 C 0.054 3.946 8 C -0.441 4.441 9 H 0.068 0.932 10 C 0.068 3.932 11 N -0.827 5.827 12 Si 0.909 3.091 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.279 1.279 16 C -0.161 4.161 17 C 0.109 3.891 18 H 0.023 0.977 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.128 0.872 26 H 0.268 0.732 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 7.082 3.159 8.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.183 5.183 3 C -0.088 4.088 4 C -0.042 4.042 5 N -0.194 5.194 6 C -0.278 4.278 7 C 0.047 3.953 8 C -0.475 4.475 9 H 0.086 0.914 10 C -0.143 4.143 11 N -0.458 5.458 12 Si 0.735 3.265 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.205 1.205 16 C -0.192 4.192 17 C -0.091 4.091 18 H 0.042 0.958 19 H 0.092 0.908 20 H 0.081 0.919 21 H 0.107 0.893 22 H 0.103 0.897 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.146 0.854 26 H 0.079 0.921 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.200 7.005 3.638 8.194 hybrid contribution -0.034 -0.033 -1.242 1.243 sum -2.234 6.972 2.396 7.703 Atomic orbital electron populations 1.22504 0.87374 1.02735 0.99377 1.60613 1.07674 1.12720 1.37320 1.23398 1.01411 0.89729 0.94301 1.22562 1.01083 0.85560 0.94962 1.44990 1.54806 1.03737 1.15841 1.21311 1.22994 0.91449 0.92035 1.18218 0.95536 0.89305 0.92235 1.18677 1.37214 0.89623 1.01974 0.91371 1.25666 0.93816 0.99563 0.95271 1.69821 1.36857 1.18980 1.20104 0.86259 0.78517 0.80769 0.80925 1.19080 1.20422 1.20468 1.22079 1.08400 0.92197 0.96477 1.20383 1.10155 0.91966 0.86567 0.95848 0.90770 0.91924 0.89310 0.89703 0.90801 0.92107 0.85428 0.92097 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.28 60.07 0.56 1.02 15 2 N -0.46 -9.31 5.39 -178.63 -0.96 -10.27 15 3 C 0.04 0.63 7.05 -2.44 -0.02 0.61 15 4 C 0.08 1.44 7.96 -2.59 -0.02 1.42 15 5 N -0.50 -11.95 3.59 -112.79 -0.40 -12.36 15 6 C -0.16 -4.08 12.04 -15.25 -0.18 -4.26 15 7 C 0.05 1.56 6.08 -104.97 -0.64 0.93 15 8 C -0.44 -12.69 9.39 -37.92 -0.36 -13.05 15 9 H 0.07 1.88 7.84 -52.49 -0.41 1.47 15 10 C 0.07 1.87 5.49 -17.36 -0.10 1.77 15 11 N -0.83 -23.11 10.40 55.53 0.58 -22.53 15 12 Si 0.91 20.37 29.56 -169.99 -5.02 15.34 15 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 16 C -0.16 -4.54 9.91 -37.03 -0.37 -4.91 15 17 C 0.11 2.70 6.74 -151.39 -1.02 1.68 15 18 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 15 19 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 20 H 0.06 0.84 8.11 -51.93 -0.42 0.42 15 21 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 22 H 0.08 1.03 7.78 -51.93 -0.40 0.63 15 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.13 3.09 8.06 -52.48 -0.42 2.67 15 26 H 0.27 6.88 8.30 -40.82 -0.34 6.54 15 27 H 0.16 4.56 5.99 -52.49 -0.31 4.25 15 LS Contribution 230.99 15.07 3.48 3.48 Total: -1.00 -31.32 230.99 -7.70 -39.02 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.22 Total: 2.10 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.14 Total: -14.79 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.79 Total: -45.16 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -31.32 -7.70 -39.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213814902.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.447 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds