Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47986 * 111.00018 * 2 1 4 4 C 1.54492 * 102.20373 * 265.44329 * 3 2 1 5 5 N 1.47716 * 103.20997 * 334.55436 * 4 3 2 6 6 C 1.36169 * 140.98127 * 196.41648 * 5 4 3 7 7 C 1.39257 * 108.03576 * 179.58131 * 6 5 4 8 8 C 1.41308 * 127.01207 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99874 * 359.86403 * 8 7 6 10 10 C 1.39560 * 119.99956 * 179.86209 * 8 7 6 11 11 N 1.31116 * 119.99568 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99799 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47412 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47322 * 119.99977 * 12 10 8 15 15 H 1.48500 * 109.46963 * 239.99627 * 12 10 8 16 16 C 1.46611 * 105.97687 * 359.93835 * 7 6 5 17 17 C 1.35928 * 106.76247 * 0.18628 * 16 7 6 18 18 H 1.08998 * 109.47027 * 59.87473 * 1 2 3 19 19 H 1.09004 * 109.47390 * 179.87949 * 1 2 3 20 20 H 1.09005 * 109.46976 * 299.87174 * 1 2 3 21 21 H 1.08997 * 110.85480 * 147.26735 * 3 2 1 22 22 H 1.08997 * 111.03510 * 23.70121 * 3 2 1 23 23 H 1.09000 * 110.67073 * 216.12899 * 4 3 2 24 24 H 1.09003 * 110.81861 * 93.05369 * 4 3 2 25 25 H 1.08004 * 125.98315 * 359.55810 * 6 5 4 26 26 H 0.97006 * 119.99931 * 179.97438 * 11 10 8 27 27 H 1.07994 * 126.61714 * 180.20956 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9994 1.3816 0.0000 4 6 2.2284 1.6435 -1.5052 5 7 2.4190 0.2872 -2.0587 6 6 2.8942 -0.3463 -3.1664 7 6 2.7545 -1.7181 -2.9718 8 6 3.1207 -2.7462 -3.8695 9 1 3.5587 -2.4981 -4.8249 10 6 2.9162 -4.0821 -3.5212 11 7 2.3848 -4.3831 -2.3610 12 14 3.4009 -5.4411 -4.7075 13 1 3.9753 -4.8419 -5.9388 14 1 4.4113 -6.3206 -4.0667 15 1 2.2007 -6.2414 -5.0604 16 6 2.1521 -1.8782 -1.6449 17 6 1.9698 -0.6279 -1.1436 18 1 -0.3633 0.5158 -0.8888 19 1 -0.3634 -1.0277 -0.0022 20 1 -0.3633 0.5119 0.8912 21 1 2.9384 1.4368 0.5508 22 1 1.2700 2.0807 0.4089 23 1 3.1207 2.2505 -1.6588 24 1 1.3572 2.1224 -1.9521 25 1 3.3069 0.1316 -4.0427 26 1 2.2423 -5.3117 -2.1191 27 1 1.9018 -2.8097 -1.1592 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213814902.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = 54.864117 kcal Electronic energy + Delta-G solvation = -11796.053296 eV Core-core repulsion = 9747.591511 eV Total energy + Delta-G solvation = -2048.461784 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.08580 -37.51686 -35.09097 -32.91137 -30.03293 -28.62301 -26.67923 -26.06834 -22.87968 -21.06396 -19.92425 -18.46706 -17.36588 -16.60921 -16.47996 -15.51755 -14.96780 -14.53697 -14.36704 -13.79548 -13.57199 -13.18074 -12.93547 -12.70587 -12.68671 -12.56292 -12.09008 -11.75329 -11.48561 -11.11913 -10.06300 -8.98482 -8.27632 -8.25377 -5.98818 1.35290 1.43379 1.58893 1.72141 2.32738 2.38673 2.47952 2.95917 3.62950 3.76169 3.98362 4.14431 4.40366 4.47994 4.60033 4.65981 4.85590 4.91419 5.25858 5.35338 5.51521 5.63342 5.95914 6.13913 6.33369 6.52738 6.94365 7.20567 7.26495 7.38734 8.69148 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.071591 B = 0.010496 C = 0.009471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.016351 B = 2667.091815 C = 2955.568839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.479 5.479 3 C 0.044 3.956 4 C 0.073 3.927 5 N -0.505 5.505 6 C -0.165 4.165 7 C 0.013 3.987 8 C -0.480 4.480 9 H 0.066 0.934 10 C 0.020 3.980 11 N -0.857 5.857 12 Si 0.988 3.012 13 H -0.261 1.261 14 H -0.270 1.270 15 H -0.270 1.270 16 C -0.219 4.219 17 C 0.128 3.872 18 H 0.023 0.977 19 H 0.053 0.947 20 H 0.109 0.891 21 H 0.097 0.903 22 H 0.135 0.865 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.142 0.858 26 H 0.274 0.726 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 8.719 3.661 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.200 5.200 3 C -0.083 4.083 4 C -0.049 4.049 5 N -0.192 5.192 6 C -0.289 4.289 7 C 0.006 3.994 8 C -0.514 4.514 9 H 0.084 0.916 10 C -0.189 4.189 11 N -0.487 5.487 12 Si 0.810 3.190 13 H -0.185 1.185 14 H -0.195 1.195 15 H -0.195 1.195 16 C -0.249 4.249 17 C -0.076 4.076 18 H 0.041 0.959 19 H 0.072 0.928 20 H 0.127 0.873 21 H 0.115 0.885 22 H 0.153 0.847 23 H 0.117 0.883 24 H 0.101 0.899 25 H 0.159 0.841 26 H 0.084 0.916 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.517 8.696 4.155 9.961 hybrid contribution 0.019 -0.380 -1.279 1.335 sum -2.499 8.316 2.876 9.147 Atomic orbital electron populations 1.22548 0.85193 1.02328 1.01579 1.60589 1.09546 1.15159 1.34724 1.23672 1.03246 0.88026 0.93334 1.23055 1.03277 0.82720 0.95848 1.45364 1.52942 1.06328 1.14609 1.21453 1.22974 0.91182 0.93309 1.18660 0.96824 0.90880 0.93075 1.18996 1.38934 0.91090 1.02371 0.91570 1.26616 0.93352 1.01769 0.97153 1.69970 1.37249 1.19778 1.21727 0.85076 0.78438 0.77120 0.78383 1.18497 1.19509 1.19465 1.21833 1.12380 0.93146 0.97549 1.20509 1.07778 0.91489 0.87781 0.95871 0.92756 0.87259 0.88463 0.84742 0.88316 0.89854 0.84073 0.91592 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.28 127.69 1.19 2.13 15 2 N -0.48 -18.16 5.39 -719.07 -3.88 -22.04 15 3 C 0.04 1.19 7.05 86.60 0.61 1.80 15 4 C 0.07 2.27 7.96 86.65 0.69 2.96 15 5 N -0.50 -23.39 3.59 -510.76 -1.83 -25.23 15 6 C -0.17 -8.79 12.04 84.27 1.01 -7.78 15 7 C 0.01 0.76 6.08 -20.09 -0.12 0.64 15 8 C -0.48 -28.84 9.39 23.34 0.22 -28.63 15 9 H 0.07 3.81 7.84 -2.91 -0.02 3.79 15 10 C 0.02 1.10 5.49 85.12 0.47 1.57 15 11 N -0.86 -49.95 10.40 21.77 0.23 -49.72 15 12 Si 0.99 42.74 29.56 68.60 2.03 44.76 15 13 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 16 C -0.22 -12.90 9.91 23.92 0.24 -12.66 15 17 C 0.13 6.31 6.74 130.64 0.88 7.20 15 18 H 0.02 0.72 8.14 -2.39 -0.02 0.70 15 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.11 2.41 8.11 -2.38 -0.02 2.39 15 21 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.13 2.38 7.78 -2.39 -0.02 2.37 15 23 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.14 6.89 8.06 -2.91 -0.02 6.87 15 26 H 0.27 14.56 8.30 -92.70 -0.77 13.79 15 27 H 0.13 8.21 5.99 -2.91 -0.02 8.19 15 Total: -1.00 -71.68 230.99 2.88 -68.80 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.15 Total: 16.19 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 5.18 Total: -32.77 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -5.49 Total: -96.99 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -71.68 2.88 -68.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213814902.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.664 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds