Wall clock time and date at job start Mon Mar 30 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48025 * 110.99790 * 2 1 4 4 C 1.54575 * 102.07740 * 147.75049 * 3 2 1 5 5 N 1.47445 * 102.98907 * 334.96512 * 4 3 2 6 6 C 1.38439 * 142.32320 * 196.12174 * 5 4 3 7 7 C 1.39789 * 126.18881 * 359.30554 * 6 5 4 8 8 H 1.08002 * 119.99865 * 341.12418 * 7 6 5 9 9 C 1.39845 * 120.00338 * 161.12887 * 7 6 5 10 10 N 1.31040 * 120.00587 * 162.98163 * 9 7 6 11 11 Si 1.86798 * 119.99657 * 342.97858 * 9 7 6 12 12 H 1.48500 * 109.47461 * 92.65620 * 11 9 7 13 13 H 1.48503 * 109.47095 * 212.65588 * 11 9 7 14 14 H 1.48504 * 109.47386 * 332.65318 * 11 9 7 15 15 C 1.39753 * 107.62627 * 179.31864 * 6 5 4 16 16 C 1.38752 * 107.36255 * 0.39775 * 15 6 5 17 17 C 1.36538 * 108.88953 * 15.78119 * 5 4 3 18 18 H 1.09002 * 109.47312 * 301.02140 * 1 2 3 19 19 H 1.08996 * 109.47293 * 61.02831 * 1 2 3 20 20 H 1.09005 * 109.47120 * 181.02982 * 1 2 3 21 21 H 1.09001 * 110.90636 * 265.94499 * 3 2 1 22 22 H 1.09002 * 110.91431 * 29.52223 * 3 2 1 23 23 H 1.08997 * 110.71108 * 216.58383 * 4 3 2 24 24 H 1.09007 * 110.70377 * 93.34204 * 4 3 2 25 25 H 0.96996 * 120.00438 * 180.02562 * 10 9 7 26 26 H 1.07994 * 126.31669 * 180.13166 * 15 6 5 27 27 H 1.08007 * 125.96380 * 179.81203 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3820 0.0000 4 6 3.3088 1.2258 0.8066 5 7 3.0456 0.0377 1.6390 6 6 3.5024 -0.6407 2.7560 7 6 4.5948 -0.2810 3.5507 8 1 5.3431 0.3959 3.1655 9 6 4.7187 -0.7975 4.8443 10 7 5.8722 -0.7436 5.4637 11 14 3.2398 -1.5644 5.6893 12 1 3.2275 -3.0273 5.4346 13 1 3.3218 -1.3172 7.1513 14 1 1.9943 -0.9583 5.1539 15 6 2.6742 -1.7504 2.9453 16 6 1.7265 -1.7374 1.9320 17 6 1.9658 -0.6268 1.1322 18 1 -0.3634 0.5296 0.8807 19 1 -0.3634 0.4978 -0.8990 20 1 -0.3633 -1.0275 0.0185 21 1 2.2060 1.7193 -1.0157 22 1 1.3117 2.0627 0.5017 23 1 3.4842 2.1024 1.4302 24 1 4.1534 1.0503 0.1401 25 1 5.9582 -1.1023 6.3608 26 1 2.7591 -2.4850 3.7324 27 1 0.9389 -2.4629 1.7908 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213815064.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:40 Heat of formation + Delta-G solvation = 50.984683 kcal Electronic energy + Delta-G solvation = -11922.106818 eV Core-core repulsion = 9873.476808 eV Total energy + Delta-G solvation = -2048.630009 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.23906 -37.82248 -35.18111 -33.69186 -30.75909 -29.12486 -26.89200 -25.28052 -23.05280 -21.74677 -20.12409 -18.92314 -17.55187 -16.96787 -16.12577 -15.76909 -15.19577 -14.74180 -14.31219 -14.08636 -13.81910 -13.51091 -13.27030 -12.99472 -12.67594 -12.44777 -12.30691 -12.03789 -11.51267 -11.16893 -10.36558 -9.27195 -8.83224 -8.47850 -6.18687 1.17945 1.33769 1.53537 1.64429 2.08941 2.22492 2.30408 3.04621 3.16660 3.52724 4.00358 4.13973 4.43149 4.56383 4.60768 4.69763 4.77655 4.84197 4.97202 5.04951 5.35232 5.45769 5.55407 5.75664 6.04492 6.29560 6.58362 6.81881 6.85568 7.22799 8.27022 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056987 B = 0.013245 C = 0.011374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.223559 B = 2113.433618 C = 2461.254417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.461 5.461 3 C 0.044 3.956 4 C 0.097 3.903 5 N -0.518 5.518 6 C 0.210 3.790 7 C -0.483 4.483 8 H 0.049 0.951 9 C 0.056 3.944 10 N -0.863 5.863 11 Si 0.978 3.022 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.255 1.255 15 C -0.346 4.346 16 C -0.180 4.180 17 C 0.077 3.923 18 H 0.027 0.973 19 H 0.102 0.898 20 H 0.071 0.929 21 H 0.136 0.864 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.292 0.708 26 H 0.116 0.884 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 3.564 -7.431 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.181 5.181 3 C -0.083 4.083 4 C -0.023 4.023 5 N -0.205 5.205 6 C 0.100 3.900 7 C -0.518 4.518 8 H 0.067 0.933 9 C -0.157 4.157 10 N -0.492 5.492 11 Si 0.803 3.197 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.179 1.179 15 C -0.369 4.369 16 C -0.208 4.208 17 C -0.124 4.124 18 H 0.046 0.954 19 H 0.121 0.879 20 H 0.089 0.911 21 H 0.154 0.846 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.125 3.634 -7.821 12.555 hybrid contribution -0.042 0.014 1.217 1.217 sum -9.167 3.648 -6.604 11.872 Atomic orbital electron populations 1.22569 0.84579 1.03143 1.01838 1.60937 1.10580 1.13726 1.32874 1.23730 0.93160 0.88878 1.02489 1.22718 0.99988 0.86928 0.92701 1.45829 1.27310 1.22783 1.24618 1.17733 0.95107 0.91407 0.85770 1.18138 1.05538 1.28665 0.99475 0.93318 1.26417 0.99200 0.93262 0.96859 1.69748 1.25656 1.39094 1.14744 0.85334 0.79848 0.79107 0.75370 1.19078 1.21023 1.17875 1.20525 1.06202 1.03104 1.07080 1.19902 1.04076 0.99509 0.97326 1.20597 0.95980 1.00020 0.95817 0.95431 0.87945 0.91063 0.84573 0.90745 0.89606 0.90059 0.89740 0.86635 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.36 127.69 1.20 1.87 15 2 N -0.46 -15.65 5.34 -717.44 -3.83 -19.48 15 3 C 0.04 1.19 6.99 86.62 0.61 1.79 15 4 C 0.10 3.49 8.05 86.73 0.70 4.19 15 5 N -0.52 -24.86 3.76 -504.85 -1.90 -26.76 15 6 C 0.21 11.62 6.44 38.84 0.25 11.87 15 7 C -0.48 -28.81 9.93 23.03 0.23 -28.58 15 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 15 9 C 0.06 3.18 5.50 85.20 0.47 3.65 15 10 N -0.86 -49.70 13.94 21.82 0.30 -49.39 15 11 Si 0.98 46.42 24.52 68.60 1.68 48.10 15 12 H -0.26 -12.13 6.70 99.48 0.67 -11.46 15 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 14 H -0.25 -12.43 6.56 99.48 0.65 -11.78 15 15 C -0.35 -18.26 8.10 22.76 0.18 -18.08 15 16 C -0.18 -8.47 10.85 22.56 0.24 -8.22 15 17 C 0.08 3.41 6.86 131.87 0.91 4.31 15 18 H 0.03 0.74 8.08 -2.39 -0.02 0.72 15 19 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 20 H 0.07 1.86 8.14 -2.38 -0.02 1.84 15 21 H 0.14 2.66 8.14 -2.39 -0.02 2.64 15 22 H 0.07 1.81 7.82 -2.39 -0.02 1.79 15 23 H 0.09 2.91 8.14 -2.39 -0.02 2.89 15 24 H 0.08 2.76 8.14 -2.38 -0.02 2.74 15 25 H 0.29 15.14 8.30 -92.71 -0.77 14.37 15 26 H 0.12 6.00 4.26 -2.91 -0.01 5.99 15 27 H 0.13 5.39 8.06 -2.91 -0.02 5.37 15 Total: -1.00 -68.49 225.30 2.10 -66.38 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.06 Total: 8.34 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 4.78 Total: -27.20 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -5.42 Total: -95.63 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.68 Total: 48.10 kcal Total: -68.49 2.10 -66.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213815064.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.369 kcal (2) G-P(sol) polarization free energy of solvation -68.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds