Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30071 * 125.16780 * 2 1 4 4 C 1.35965 * 109.13307 * 180.02562 * 3 2 1 5 5 C 1.41219 * 126.49338 * 179.77049 * 4 3 2 6 6 H 1.08007 * 120.00145 * 180.02562 * 5 4 3 7 7 C 1.39717 * 119.99911 * 0.02562 * 5 4 3 8 8 N 1.31012 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99831 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47361 * 59.99884 * 9 7 5 11 11 H 1.48506 * 109.46967 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47058 * 299.99645 * 9 7 5 13 13 C 1.39029 * 107.01739 * 0.03449 * 4 3 2 14 14 N 1.35830 * 106.70069 * 359.86331 * 13 4 3 15 15 C 1.47083 * 110.73700 * 180.29002 * 14 13 4 16 16 C 1.54370 * 105.65216 * 342.80059 * 15 14 13 17 17 C 1.51176 * 143.18517 * 179.72508 * 13 4 3 18 18 H 1.09003 * 109.46648 * 90.03038 * 1 2 3 19 19 H 1.09003 * 109.47076 * 210.02626 * 1 2 3 20 20 H 1.08997 * 109.47421 * 330.02780 * 1 2 3 21 21 H 0.97006 * 119.99859 * 179.97438 * 8 7 5 22 22 H 1.08996 * 110.21271 * 101.84375 * 15 14 13 23 23 H 1.09002 * 110.21107 * 223.75565 * 15 14 13 24 24 H 1.08999 * 110.94600 * 267.68016 * 16 15 14 25 25 H 1.09005 * 110.97375 * 144.00193 * 16 15 14 26 26 H 1.09003 * 110.48278 * 315.29305 * 17 13 4 27 27 H 1.09007 * 110.47671 * 77.91328 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2562 1.0633 0.0000 4 6 3.5629 0.6877 -0.0006 5 6 4.6837 1.5469 -0.0053 6 1 5.6813 1.1331 -0.0057 7 6 4.5020 2.9322 -0.0095 8 7 3.2918 3.4341 -0.0095 9 14 5.9845 4.0686 -0.0165 10 1 6.8007 3.8102 -1.2299 11 1 5.5256 5.4809 -0.0207 12 1 6.8059 3.8182 1.1951 13 6 3.5867 -0.7024 -0.0017 14 7 2.2926 -1.1150 0.0013 15 6 2.2143 -2.5837 0.0073 16 6 3.6096 -3.0770 -0.4317 17 6 4.5132 -1.8969 -0.0073 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3634 0.8902 0.5134 21 1 3.1657 4.3959 -0.0120 22 1 1.9856 -2.9445 1.0100 23 1 1.4557 -2.9232 -0.6980 24 1 3.6477 -3.2284 -1.5105 25 1 3.8854 -3.9890 0.0977 26 1 5.3169 -1.7530 -0.7295 27 1 4.9209 -2.0679 0.9891 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213815227.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = 57.183678 kcal Electronic energy + Delta-G solvation = -11801.098740 eV Core-core repulsion = 9752.737540 eV Total energy + Delta-G solvation = -2048.361201 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.43025 -35.33302 -33.07517 -30.60547 -29.16588 -27.06559 -26.60926 -22.71328 -21.09442 -19.23368 -18.12448 -16.72650 -15.54512 -14.70008 -14.10288 -13.43696 -12.98262 -12.45740 -12.38117 -12.02806 -11.74716 -11.69014 -11.21589 -11.00044 -10.85943 -10.78911 -10.36076 -10.13165 -9.84340 -9.03532 -8.02882 -7.79496 -6.70397 -6.12767 -3.87724 3.20416 3.29851 3.32951 3.55453 4.08957 4.29723 4.65939 5.03056 5.28681 5.47199 5.70929 5.78749 5.80423 5.96292 6.05554 6.12993 6.29649 6.42986 6.52206 6.66894 6.72291 7.25744 7.62116 7.82786 8.11734 8.59048 8.84466 9.19502 9.42068 10.10225 10.81896 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045996 B = 0.012882 C = 0.010201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.597962 B = 2172.997697 C = 2744.087470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.178 3.822 3 N -0.447 5.447 4 C 0.219 3.781 5 C -0.452 4.452 6 H 0.073 0.927 7 C 0.075 3.925 8 N -0.775 5.775 9 Si 0.900 3.100 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.270 1.270 13 C -0.217 4.217 14 N -0.492 5.492 15 C 0.120 3.880 16 C -0.130 4.130 17 C -0.018 4.018 18 H 0.060 0.940 19 H 0.051 0.949 20 H 0.077 0.923 21 H 0.266 0.734 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -8.550 -0.195 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 N -0.170 5.170 4 C 0.095 3.905 5 C -0.488 4.488 6 H 0.091 0.909 7 C -0.143 4.143 8 N -0.402 5.402 9 Si 0.726 3.274 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.325 4.325 14 N -0.187 5.187 15 C -0.004 4.004 16 C -0.168 4.168 17 C -0.056 4.056 18 H 0.078 0.922 19 H 0.070 0.930 20 H 0.096 0.904 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.202 -7.637 -0.195 7.951 hybrid contribution 0.908 -0.324 0.003 0.964 sum -1.294 -7.961 -0.192 8.068 Atomic orbital electron populations 1.19896 0.87863 1.01875 1.01447 1.23185 0.94355 0.80588 1.09893 1.71269 1.01992 1.22682 1.21100 1.17731 0.90242 0.86362 0.96133 1.18424 0.91701 0.89849 1.48791 0.90857 1.25765 0.96043 0.98774 0.93738 1.70089 1.21135 1.12385 1.36594 0.86535 0.82476 0.79096 0.79273 1.19540 1.20800 1.19530 1.22149 0.84050 0.94966 1.31368 1.46034 1.08471 1.04301 1.59879 1.21832 0.98236 0.79939 1.00396 1.22619 0.94429 0.98466 1.01280 1.19974 0.95777 0.89956 0.99913 0.92153 0.92990 0.90385 0.92375 0.91930 0.91748 0.91112 0.90641 0.91897 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 10.51 36.00 0.38 -0.60 15 2 C 0.18 4.43 8.11 -154.52 -1.25 3.17 15 3 N -0.45 -13.21 9.51 -8.11 -0.08 -13.28 15 4 C 0.22 6.52 6.69 -84.61 -0.57 5.96 15 5 C -0.45 -13.43 9.38 -37.90 -0.36 -13.78 15 6 H 0.07 2.06 7.84 -52.48 -0.41 1.65 15 7 C 0.07 2.12 5.49 -17.35 -0.10 2.03 15 8 N -0.78 -23.06 11.95 55.54 0.66 -22.39 15 9 Si 0.90 20.77 29.56 -169.99 -5.02 15.75 15 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 13 C -0.22 -5.57 7.56 -80.30 -0.61 -6.17 15 14 N -0.49 -11.39 3.61 -106.76 -0.39 -11.78 15 15 C 0.12 2.04 7.77 -3.01 -0.02 2.01 15 16 C -0.13 -2.01 7.16 -25.19 -0.18 -2.19 15 17 C -0.02 -0.35 6.85 -26.82 -0.18 -0.53 15 18 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 21 H 0.27 7.27 8.30 -40.82 -0.34 6.93 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 LS Contribution 234.89 15.07 3.54 3.54 Total: -1.00 -33.92 234.89 -7.52 -41.44 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -3.35 Total: -3.17 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.89 Total: -10.11 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.20 Total: -47.45 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -33.92 -7.52 -41.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213815227.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.628 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds