Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30071 * 125.16780 * 2 1 4 4 C 1.35965 * 109.13307 * 180.02562 * 3 2 1 5 5 C 1.41219 * 126.49338 * 179.77049 * 4 3 2 6 6 H 1.08007 * 120.00145 * 180.02562 * 5 4 3 7 7 C 1.39717 * 119.99911 * 0.02562 * 5 4 3 8 8 N 1.31012 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99831 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47361 * 59.99884 * 9 7 5 11 11 H 1.48506 * 109.46967 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47058 * 299.99645 * 9 7 5 13 13 C 1.39029 * 107.01739 * 0.03449 * 4 3 2 14 14 N 1.35830 * 106.70069 * 359.86331 * 13 4 3 15 15 C 1.47083 * 110.73700 * 180.29002 * 14 13 4 16 16 C 1.54370 * 105.65216 * 342.80059 * 15 14 13 17 17 C 1.51176 * 143.18517 * 179.72508 * 13 4 3 18 18 H 1.09003 * 109.46648 * 90.03038 * 1 2 3 19 19 H 1.09003 * 109.47076 * 210.02626 * 1 2 3 20 20 H 1.08997 * 109.47421 * 330.02780 * 1 2 3 21 21 H 0.97006 * 119.99859 * 179.97438 * 8 7 5 22 22 H 1.08996 * 110.21271 * 101.84375 * 15 14 13 23 23 H 1.09002 * 110.21107 * 223.75565 * 15 14 13 24 24 H 1.08999 * 110.94600 * 267.68016 * 16 15 14 25 25 H 1.09005 * 110.97375 * 144.00193 * 16 15 14 26 26 H 1.09003 * 110.48278 * 315.29305 * 17 13 4 27 27 H 1.09007 * 110.47671 * 77.91328 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2562 1.0633 0.0000 4 6 3.5629 0.6877 -0.0006 5 6 4.6837 1.5469 -0.0053 6 1 5.6813 1.1331 -0.0057 7 6 4.5020 2.9322 -0.0095 8 7 3.2918 3.4341 -0.0095 9 14 5.9845 4.0686 -0.0165 10 1 6.8007 3.8102 -1.2299 11 1 5.5256 5.4809 -0.0207 12 1 6.8059 3.8182 1.1951 13 6 3.5867 -0.7024 -0.0017 14 7 2.2926 -1.1150 0.0013 15 6 2.2143 -2.5837 0.0073 16 6 3.6096 -3.0770 -0.4317 17 6 4.5132 -1.8969 -0.0073 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3634 0.8902 0.5134 21 1 3.1657 4.3959 -0.0120 22 1 1.9856 -2.9445 1.0100 23 1 1.4557 -2.9232 -0.6980 24 1 3.6477 -3.2284 -1.5105 25 1 3.8854 -3.9890 0.0977 26 1 5.3169 -1.7530 -0.7295 27 1 4.9209 -2.0679 0.9891 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213815227.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = 34.841645 kcal Electronic energy + Delta-G solvation = -11802.067563 eV Core-core repulsion = 9752.737540 eV Total energy + Delta-G solvation = -2049.330024 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.26656 -36.98314 -35.08855 -32.43263 -30.77920 -28.79466 -28.47860 -24.56062 -22.61100 -21.09293 -19.93492 -18.70284 -17.05000 -16.67398 -15.87760 -15.03840 -14.64218 -14.28589 -13.84347 -13.54723 -13.41923 -13.21769 -12.88392 -12.76603 -12.68579 -12.26012 -12.13253 -11.80992 -11.78756 -11.01488 -10.00428 -9.70257 -8.71418 -8.19177 -6.01003 1.36623 1.40612 1.53735 1.70421 2.34924 2.48598 2.63630 3.64285 3.70716 4.02504 4.08125 4.12299 4.48656 4.54806 4.67961 4.75936 4.83628 4.95648 5.06072 5.14574 5.30199 5.31807 5.57808 5.89491 6.12102 6.48115 6.99434 7.12490 7.37372 8.12955 8.77695 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045996 B = 0.012882 C = 0.010201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.597962 B = 2172.997697 C = 2744.087470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C 0.160 3.840 3 N -0.503 5.503 4 C 0.154 3.846 5 C -0.493 4.493 6 H 0.072 0.928 7 C 0.021 3.979 8 N -0.822 5.822 9 Si 0.982 3.018 10 H -0.262 1.262 11 H -0.274 1.274 12 H -0.262 1.262 13 C -0.218 4.218 14 N -0.490 5.490 15 C 0.107 3.893 16 C -0.113 4.113 17 C -0.025 4.025 18 H 0.077 0.923 19 H 0.087 0.913 20 H 0.072 0.928 21 H 0.267 0.733 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.063 0.937 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -10.832 -0.240 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.100 4.100 3 N -0.227 5.227 4 C 0.029 3.971 5 C -0.528 4.528 6 H 0.090 0.910 7 C -0.192 4.192 8 N -0.450 5.450 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.187 1.187 13 C -0.329 4.329 14 N -0.182 5.182 15 C -0.014 4.014 16 C -0.150 4.150 17 C -0.064 4.064 18 H 0.095 0.905 19 H 0.106 0.894 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.104 0.896 23 H 0.113 0.887 24 H 0.099 0.901 25 H 0.139 0.861 26 H 0.081 0.919 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.151 -9.982 -0.240 10.214 hybrid contribution 0.818 0.176 0.027 0.837 sum -1.333 -9.806 -0.214 9.899 Atomic orbital electron populations 1.20009 0.83946 1.03348 1.02977 1.24077 0.96597 0.80545 1.08740 1.71114 1.02655 1.25848 1.23074 1.18291 0.90866 0.88780 0.99117 1.18761 0.91953 0.91282 1.50818 0.91019 1.26713 0.99479 1.00122 0.92922 1.70245 1.23630 1.12634 1.38459 0.85293 0.78095 0.76657 0.79609 1.18675 1.19862 1.18670 1.22928 0.86830 0.95161 1.27942 1.46421 1.07192 1.06757 1.57856 1.22363 1.00306 0.75937 1.02843 1.22661 0.91772 0.98019 1.02571 1.20194 0.95781 0.89589 1.00792 0.90464 0.89420 0.90939 0.92295 0.89597 0.88727 0.90059 0.86126 0.91865 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.60 10.51 71.24 0.75 -0.85 15 2 C 0.16 7.95 8.11 137.82 1.12 9.07 15 3 N -0.50 -30.84 9.51 -179.59 -1.71 -32.55 15 4 C 0.15 9.52 6.69 39.43 0.26 9.78 15 5 C -0.49 -30.61 9.38 23.36 0.22 -30.40 15 6 H 0.07 4.22 7.84 -2.91 -0.02 4.20 15 7 C 0.02 1.21 5.49 85.17 0.47 1.68 15 8 N -0.82 -51.23 11.95 21.79 0.26 -50.97 15 9 Si 0.98 44.20 29.56 68.60 2.03 46.22 15 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 12 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 13 C -0.22 -11.18 7.56 42.28 0.32 -10.86 15 14 N -0.49 -21.92 3.61 -491.69 -1.78 -23.69 15 15 C 0.11 3.16 7.77 86.73 0.67 3.83 15 16 C -0.11 -2.95 7.16 31.59 0.23 -2.73 15 17 C -0.02 -0.94 6.85 30.53 0.21 -0.73 15 18 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 19 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 20 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 21 H 0.27 15.33 8.30 -92.70 -0.77 14.56 15 22 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.12 2.17 8.14 -2.38 -0.02 2.15 15 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.06 2.31 8.14 -2.38 -0.02 2.29 15 Total: -1.00 -79.06 234.89 4.20 -74.85 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.15 Total: 7.34 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.25 Total: -21.20 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.22 Total: -107.21 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -79.06 4.20 -74.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213815227.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.693 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds