Wall clock time and date at job start Mon Mar 30 2020 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38955 * 126.78925 * 2 1 4 4 C 1.41225 * 126.43115 * 359.95915 * 3 2 1 5 5 H 1.07999 * 120.00392 * 7.91191 * 4 3 2 6 6 C 1.39714 * 119.99902 * 187.91277 * 4 3 2 7 7 N 1.31023 * 119.99913 * 191.77588 * 6 4 3 8 8 Si 1.86797 * 120.00008 * 11.50739 * 6 4 3 9 9 H 1.48502 * 109.46886 * 270.27326 * 8 6 4 10 10 H 1.48501 * 109.47336 * 30.27134 * 8 6 4 11 11 H 1.48500 * 109.47313 * 150.27277 * 8 6 4 12 12 N 1.35805 * 107.13726 * 179.69085 * 3 2 1 13 13 C 1.30682 * 109.23596 * 0.18651 * 12 3 2 14 14 N 1.35826 * 109.40894 * 0.12251 * 13 12 3 15 15 C 1.47087 * 111.01428 * 179.75996 * 14 13 12 16 16 C 1.54342 * 105.56911 * 17.26992 * 15 14 13 17 17 C 1.51693 * 140.85206 * 180.24345 * 13 12 3 18 18 H 1.09004 * 109.46845 * 90.02519 * 1 2 3 19 19 H 1.08999 * 109.47248 * 210.02497 * 1 2 3 20 20 H 1.09003 * 109.47514 * 330.02803 * 1 2 3 21 21 H 0.96994 * 119.99705 * 354.52186 * 7 6 4 22 22 H 1.08995 * 110.22429 * 136.29826 * 15 14 13 23 23 H 1.09004 * 110.22702 * 258.24342 * 15 14 13 24 24 H 1.09000 * 110.93771 * 92.15766 * 16 15 14 25 25 H 1.08999 * 110.94164 * 215.84133 * 16 15 14 26 26 H 1.08998 * 110.46869 * 281.94507 * 17 13 12 27 27 H 1.09001 * 110.47012 * 44.54473 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3391 1.1128 0.0000 4 6 1.9314 2.4649 -0.0008 5 1 0.8885 2.7146 0.1272 6 6 2.8773 3.4797 -0.1673 7 7 2.5467 4.7270 0.0597 8 14 4.6152 3.0572 -0.7062 9 1 5.4564 2.8023 0.4907 10 1 4.5874 1.8422 -1.5595 11 1 5.1836 4.1914 -1.4782 12 7 3.6181 0.6561 0.0070 13 6 3.6086 -0.6507 0.0072 14 7 2.3243 -1.0927 -0.0025 15 6 2.2725 -2.5627 -0.0083 16 6 3.6740 -3.0284 0.4400 17 6 4.5577 -1.8340 0.0166 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3634 0.8902 0.5134 21 1 1.6268 4.9551 0.2658 22 1 1.5159 -2.9158 0.6923 23 1 2.0572 -2.9282 -1.0124 24 1 3.7088 -3.1755 1.5194 25 1 3.9692 -3.9368 -0.0852 26 1 4.9707 -1.9993 -0.9785 27 1 5.3570 -1.6759 0.7406 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213815307.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:00 Heat of formation + Delta-G solvation = 45.974209 kcal Electronic energy + Delta-G solvation = -11888.760761 eV Core-core repulsion = 9839.913481 eV Total energy + Delta-G solvation = -2048.847280 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.86528 -35.70946 -32.93584 -31.55087 -29.49194 -27.63569 -25.64165 -23.71893 -20.72079 -19.57572 -18.41961 -17.43961 -15.99332 -14.78723 -13.86163 -13.62536 -13.32155 -12.88132 -12.73945 -12.20402 -11.94879 -11.63313 -11.42253 -11.26408 -11.17409 -10.91947 -10.44971 -10.04586 -9.30527 -8.79819 -8.35995 -7.89991 -7.02645 -6.80213 -4.09041 3.14769 3.70370 3.71817 3.87791 4.18692 4.37350 4.51660 4.65711 4.92336 4.94627 5.27468 5.58061 5.62778 5.75044 5.77898 6.01992 6.09907 6.17067 6.18247 6.47178 6.65311 7.03421 7.50893 7.78796 7.99095 8.24223 8.67138 8.83633 9.19232 9.58375 10.53986 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.015152 C = 0.011654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.121330 B = 1847.543418 C = 2402.043251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.172 4.172 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.048 3.952 7 N -0.851 5.851 8 Si 1.118 2.882 9 H -0.288 1.288 10 H -0.267 1.267 11 H -0.322 1.322 12 N -0.521 5.521 13 C 0.164 3.836 14 N -0.478 5.478 15 C 0.112 3.888 16 C -0.129 4.129 17 C -0.035 4.035 18 H 0.040 0.960 19 H 0.032 0.968 20 H 0.063 0.937 21 H 0.275 0.725 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -13.975 -0.383 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.278 4.278 3 C 0.071 3.929 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.168 4.168 7 N -0.478 5.478 8 Si 0.949 3.051 9 H -0.215 1.215 10 H -0.193 1.193 11 H -0.253 1.253 12 N -0.249 5.249 13 C -0.095 4.095 14 N -0.170 5.170 15 C -0.011 4.011 16 C -0.167 4.167 17 C -0.075 4.075 18 H 0.059 0.941 19 H 0.051 0.949 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.069 -12.900 -0.633 13.276 hybrid contribution -2.530 -1.173 0.404 2.817 sum 0.539 -14.073 -0.230 14.085 Atomic orbital electron populations 1.19573 0.89610 1.00163 0.99618 1.20680 0.92316 0.84060 1.30791 1.18444 0.85123 0.92847 0.96521 1.19524 0.96566 0.88466 1.49309 0.90766 1.27105 1.07154 0.92038 0.90465 1.70718 1.21438 1.19810 1.35808 0.82723 0.71936 0.72631 0.77766 1.21464 1.19278 1.25281 1.69624 1.23457 1.05675 1.26108 1.23857 0.85181 0.91893 1.08566 1.45514 1.08379 1.04511 1.58591 1.21967 0.98385 0.79376 1.01405 1.22642 0.93661 0.98155 1.02224 1.20474 0.95887 0.88463 1.02634 0.94136 0.94907 0.91788 0.91457 0.90975 0.91153 0.90210 0.89244 0.89901 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.66 10.25 36.00 0.37 -0.29 15 2 C -0.17 -4.30 7.38 -80.27 -0.59 -4.89 15 3 C 0.19 5.52 6.35 -84.71 -0.54 4.98 15 4 C -0.50 -15.19 9.53 -37.90 -0.36 -15.55 15 5 H 0.07 2.25 7.51 -52.49 -0.39 1.85 15 6 C 0.05 1.43 5.51 -17.35 -0.10 1.34 15 7 N -0.85 -25.80 13.67 55.54 0.76 -25.04 15 8 Si 1.12 29.94 26.34 -169.99 -4.48 25.46 15 9 H -0.29 -7.66 7.11 56.52 0.40 -7.26 15 10 H -0.27 -7.15 6.27 56.52 0.35 -6.79 15 11 H -0.32 -8.36 7.11 56.52 0.40 -7.96 15 12 N -0.52 -14.26 6.53 -7.86 -0.05 -14.31 15 13 C 0.16 3.73 8.56 -154.06 -1.32 2.42 15 14 N -0.48 -10.35 3.57 -106.43 -0.38 -10.73 15 15 C 0.11 1.66 7.77 -3.02 -0.02 1.63 15 16 C -0.13 -1.52 7.15 -25.25 -0.18 -1.70 15 17 C -0.04 -0.54 6.86 -26.61 -0.18 -0.73 15 18 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 19 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.06 1.37 7.54 -51.93 -0.39 0.98 15 21 H 0.27 8.05 8.73 -40.82 -0.36 7.70 15 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.09 0.75 8.14 -51.93 -0.42 0.32 15 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 228.88 15.07 3.45 3.45 Total: -1.00 -34.56 228.88 -6.99 -41.55 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -3.37 Total: -7.60 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.92 Total: -12.79 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.33 Total: -50.08 kcal Atomic # 14 Polarization: 29.94 SS G_CDS: -4.48 Total: 25.46 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -34.56 -6.99 -41.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213815307.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.526 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds