Wall clock time and date at job start Mon Mar 30 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 N 1.40084 * 126.03623 * 269.68636 * 4 3 2 6 6 C 1.30833 * 108.20572 * 179.85448 * 5 4 3 7 7 C 1.39866 * 108.20392 * 0.40681 * 6 5 4 8 8 C 1.34942 * 126.04095 * 90.00199 * 4 3 2 9 9 C 1.50710 * 126.12424 * 359.95072 * 8 4 3 10 10 C 1.50705 * 109.47203 * 265.00672 * 9 8 4 11 11 H 1.08002 * 119.99833 * 359.97438 * 10 9 8 12 12 C 1.37866 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00442 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47125 * 90.00138 * 14 12 10 16 16 H 1.48505 * 109.47315 * 209.99555 * 14 12 10 17 17 H 1.48491 * 109.47215 * 329.99854 * 14 12 10 18 18 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 19 19 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 20 20 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 21 21 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 22 22 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 23 23 H 1.08000 * 125.89967 * 180.14567 * 6 5 4 24 24 H 1.07996 * 126.04597 * 179.73793 * 7 6 5 25 25 H 1.09000 * 109.46518 * 25.00060 * 9 8 4 26 26 H 1.08991 * 109.46673 * 145.00257 * 9 8 4 27 27 H 0.97001 * 120.00267 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 7 2.7053 1.8224 2.4174 6 6 3.7756 1.6781 3.1558 7 6 4.7768 1.1032 2.3663 8 6 4.2673 0.9023 1.1290 9 6 4.9966 0.3025 -0.0456 10 6 4.9067 -1.2004 0.0214 11 1 4.3751 -1.6738 0.8336 12 6 5.5041 -1.9708 -0.9535 13 7 6.1519 -1.3943 -1.9422 14 14 5.3933 -3.8336 -0.8700 15 1 4.1835 -4.2908 -1.6000 16 1 6.6022 -4.4299 -1.4932 17 1 5.3060 -4.2612 0.5493 18 1 -0.5400 0.9353 -0.0045 19 1 -0.5400 -0.9353 0.0045 20 1 1.8500 -0.9353 0.0046 21 1 2.6252 1.4004 -0.9293 22 1 1.3582 2.1318 0.0846 23 1 3.8710 1.9586 4.1944 24 1 5.7794 0.8622 2.6874 25 1 4.5423 0.6526 -0.9725 26 1 6.0431 0.6056 -0.0167 27 1 6.5719 -1.9363 -2.6283 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213816148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:26 Heat of formation + Delta-G solvation = 85.539636 kcal Electronic energy + Delta-G solvation = -11547.016287 eV Core-core repulsion = 9499.884693 eV Total energy + Delta-G solvation = -2047.131594 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.37488 -34.91827 -33.44757 -31.21802 -30.34727 -26.92277 -25.67047 -23.15790 -20.36346 -20.00920 -18.62716 -16.43776 -15.96898 -15.01456 -14.54640 -14.17315 -13.30725 -13.18753 -12.69951 -12.34341 -11.95255 -11.51883 -11.31105 -10.95600 -10.84432 -10.71062 -10.03188 -9.76209 -9.59577 -9.23452 -8.52871 -8.42867 -7.62113 -6.15008 -4.19350 2.35047 2.78725 3.24445 3.31654 3.35994 3.45893 3.68204 4.36984 5.12638 5.19959 5.21942 5.52450 5.73904 5.80827 5.91769 6.17727 6.33904 6.65342 6.80863 6.88928 6.94579 7.32861 7.45954 7.49023 7.80452 7.86582 8.19016 8.54101 8.84554 9.45274 10.94865 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.012693 C = 0.010513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.348317 B = 2205.366570 C = 2662.708540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C 0.165 3.835 4 N -0.372 5.372 5 N -0.329 5.329 6 C 0.040 3.960 7 C -0.301 4.301 8 C 0.140 3.860 9 C 0.072 3.928 10 C -0.512 4.512 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.272 1.272 18 H 0.094 0.906 19 H 0.098 0.902 20 H 0.124 0.876 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.171 0.829 24 H 0.138 0.862 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 3.229 3.020 7.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.174 4.174 3 C 0.044 3.956 4 N -0.155 5.155 5 N -0.150 5.150 6 C -0.146 4.146 7 C -0.330 4.330 8 C 0.013 3.987 9 C 0.033 3.967 10 C -0.551 4.551 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.197 1.197 18 H 0.112 0.888 19 H 0.117 0.883 20 H 0.142 0.858 21 H 0.120 0.880 22 H 0.104 0.896 23 H 0.188 0.812 24 H 0.156 0.844 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.204 3.619 2.723 8.510 hybrid contribution 0.862 -1.414 0.046 1.656 sum -6.342 2.205 2.770 7.264 Atomic orbital electron populations 1.23762 0.95591 1.01599 1.01622 1.23385 0.96079 0.99363 0.98529 1.20586 0.91730 0.96206 0.87072 1.48451 1.09570 1.48699 1.08736 1.77130 1.23913 1.23915 0.90044 1.23623 0.91594 0.99939 0.99422 1.21107 1.01997 1.16201 0.93721 1.22139 0.84470 0.93079 0.99062 1.18071 0.95094 0.95432 0.88073 1.20937 1.34757 0.89763 1.09624 0.92359 1.24969 0.94938 0.98939 0.95185 1.69939 1.34844 1.35707 1.12564 0.86520 0.77650 0.85077 0.78423 1.20559 1.21005 1.19711 0.88786 0.88344 0.85765 0.87966 0.89579 0.81198 0.84420 0.95226 0.93597 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 29.01 0.42 -2.26 15 2 C -0.15 -2.67 9.85 -36.03 -0.35 -3.03 15 3 C 0.17 2.92 6.68 -5.19 -0.03 2.88 15 4 N -0.37 -7.80 3.60 -58.31 -0.21 -8.00 15 5 N -0.33 -6.81 12.58 30.62 0.39 -6.42 15 6 C 0.04 0.76 12.02 -17.37 -0.21 0.55 15 7 C -0.30 -6.32 10.72 -40.01 -0.43 -6.75 15 8 C 0.14 3.17 6.12 -82.26 -0.50 2.66 15 9 C 0.07 1.79 5.26 -29.03 -0.15 1.64 15 10 C -0.51 -13.83 9.09 -34.44 -0.31 -14.14 15 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 13 N -0.89 -25.30 13.29 55.43 0.74 -24.56 15 14 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 18 H 0.09 1.17 7.84 -52.49 -0.41 0.76 15 19 H 0.10 1.26 8.06 -52.49 -0.42 0.84 15 20 H 0.12 2.44 8.06 -52.49 -0.42 2.02 15 21 H 0.10 1.77 6.98 -51.93 -0.36 1.41 15 22 H 0.09 1.32 7.79 -51.93 -0.40 0.91 15 23 H 0.17 2.51 8.06 -52.49 -0.42 2.09 15 24 H 0.14 2.70 8.06 -52.49 -0.42 2.28 15 25 H 0.03 0.75 6.95 -51.93 -0.36 0.39 15 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 245.81 15.07 3.70 3.70 Total: -1.00 -29.68 245.81 -5.28 -34.96 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.19 Total: 1.24 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -1.68 Total: -16.86 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.91 Total: -38.99 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.68 -5.28 -34.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213816148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.497 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds