Wall clock time and date at job start Mon Mar 30 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 N 1.40084 * 126.03623 * 269.68636 * 4 3 2 6 6 C 1.30833 * 108.20572 * 179.85448 * 5 4 3 7 7 C 1.39866 * 108.20392 * 0.40681 * 6 5 4 8 8 C 1.34942 * 126.04095 * 90.00199 * 4 3 2 9 9 C 1.50710 * 126.12424 * 359.95072 * 8 4 3 10 10 C 1.50705 * 109.47203 * 265.00672 * 9 8 4 11 11 H 1.08002 * 119.99833 * 359.97438 * 10 9 8 12 12 C 1.37866 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00442 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47125 * 90.00138 * 14 12 10 16 16 H 1.48505 * 109.47315 * 209.99555 * 14 12 10 17 17 H 1.48491 * 109.47215 * 329.99854 * 14 12 10 18 18 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 19 19 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 20 20 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 21 21 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 22 22 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 23 23 H 1.08000 * 125.89967 * 180.14567 * 6 5 4 24 24 H 1.07996 * 126.04597 * 179.73793 * 7 6 5 25 25 H 1.09000 * 109.46518 * 25.00060 * 9 8 4 26 26 H 1.08991 * 109.46673 * 145.00257 * 9 8 4 27 27 H 0.97001 * 120.00267 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 7 2.7053 1.8224 2.4174 6 6 3.7756 1.6781 3.1558 7 6 4.7768 1.1032 2.3663 8 6 4.2673 0.9023 1.1290 9 6 4.9966 0.3025 -0.0456 10 6 4.9067 -1.2004 0.0214 11 1 4.3751 -1.6738 0.8336 12 6 5.5041 -1.9708 -0.9535 13 7 6.1519 -1.3943 -1.9422 14 14 5.3933 -3.8336 -0.8700 15 1 4.1835 -4.2908 -1.6000 16 1 6.6022 -4.4299 -1.4932 17 1 5.3060 -4.2612 0.5493 18 1 -0.5400 0.9353 -0.0045 19 1 -0.5400 -0.9353 0.0045 20 1 1.8500 -0.9353 0.0046 21 1 2.6252 1.4004 -0.9293 22 1 1.3582 2.1318 0.0846 23 1 3.8710 1.9586 4.1944 24 1 5.7794 0.8622 2.6874 25 1 4.5423 0.6526 -0.9725 26 1 6.0431 0.6056 -0.0167 27 1 6.5719 -1.9363 -2.6283 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213816148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:25 Heat of formation + Delta-G solvation = 67.891307 kcal Electronic energy + Delta-G solvation = -11547.781576 eV Core-core repulsion = 9499.884693 eV Total energy + Delta-G solvation = -2047.896883 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.97317 -36.27934 -35.46873 -32.90997 -31.98694 -28.81127 -27.07877 -25.17371 -21.87236 -21.41926 -20.18992 -18.53297 -17.62251 -16.48184 -16.37544 -15.67183 -14.85427 -14.70581 -14.38742 -14.04410 -13.78787 -13.31556 -12.83875 -12.71712 -12.56820 -12.23832 -11.89622 -11.65083 -11.46988 -10.64023 -10.48861 -10.03014 -9.29100 -8.24267 -6.36358 0.99472 1.21724 1.39049 1.40720 1.51608 1.99159 2.07337 2.40352 3.08291 3.76302 3.92420 4.17300 4.17933 4.40681 4.57125 4.68371 4.95217 5.00589 5.11493 5.24403 5.62352 5.62475 5.67774 5.69473 5.94811 6.03143 6.30345 6.72065 6.94430 7.32124 8.85456 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.012693 C = 0.010513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.348317 B = 2205.366570 C = 2662.708540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.193 4.193 3 C 0.161 3.839 4 N -0.376 5.376 5 N -0.337 5.337 6 C 0.049 3.951 7 C -0.309 4.309 8 C 0.111 3.889 9 C 0.084 3.916 10 C -0.523 4.523 11 H 0.048 0.952 12 C 0.015 3.985 13 N -0.924 5.924 14 Si 0.960 3.040 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.270 1.270 18 H 0.120 0.880 19 H 0.115 0.885 20 H 0.090 0.910 21 H 0.093 0.907 22 H 0.113 0.887 23 H 0.215 0.785 24 H 0.145 0.855 25 H 0.016 0.984 26 H 0.024 0.976 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 3.004 3.957 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.212 4.212 3 C 0.041 3.959 4 N -0.158 5.158 5 N -0.158 5.158 6 C -0.136 4.136 7 C -0.338 4.338 8 C -0.017 4.017 9 C 0.046 3.954 10 C -0.561 4.561 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.563 5.563 14 Si 0.785 3.215 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.194 1.194 18 H 0.138 0.862 19 H 0.133 0.867 20 H 0.109 0.891 21 H 0.111 0.889 22 H 0.131 0.869 23 H 0.232 0.768 24 H 0.163 0.837 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.597 3.399 3.655 9.940 hybrid contribution 1.222 -1.298 -0.223 1.797 sum -7.374 2.102 3.431 8.401 Atomic orbital electron populations 1.24073 0.94330 1.03624 0.96671 1.23124 0.97133 0.97767 1.03172 1.20792 0.91743 0.97501 0.85884 1.48710 1.09281 1.48237 1.09547 1.77092 1.24658 1.24055 0.90023 1.24250 0.90036 0.98392 1.00968 1.21378 1.02922 1.15960 0.93501 1.21871 0.85834 0.95016 0.98987 1.17739 0.94075 0.94786 0.88819 1.21105 1.34634 0.90961 1.09431 0.93338 1.25759 0.94437 1.03520 0.94707 1.70039 1.35560 1.37461 1.13230 0.85515 0.78006 0.79512 0.78481 1.19691 1.20269 1.19449 0.86154 0.86690 0.89148 0.88865 0.86898 0.76810 0.83685 0.96628 0.95734 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 14.32 67.78 0.97 -2.89 15 2 C -0.19 -6.58 9.85 25.64 0.25 -6.32 15 3 C 0.16 5.64 6.68 85.63 0.57 6.21 15 4 N -0.38 -15.62 3.60 -338.39 -1.22 -16.83 15 5 N -0.34 -13.35 12.58 -57.03 -0.72 -14.06 15 6 C 0.05 1.75 12.02 85.24 1.02 2.77 15 7 C -0.31 -12.76 10.72 21.99 0.24 -12.53 15 8 C 0.11 5.09 6.12 41.41 0.25 5.34 15 9 C 0.08 4.39 5.26 29.11 0.15 4.54 15 10 C -0.52 -28.97 9.09 25.60 0.23 -28.74 15 11 H 0.05 2.73 7.74 -2.91 -0.02 2.70 15 12 C 0.02 0.83 5.46 84.65 0.46 1.29 15 13 N -0.92 -53.30 13.29 21.44 0.28 -53.02 15 14 Si 0.96 43.19 29.54 68.60 2.03 45.22 15 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 16 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 18 H 0.12 2.51 7.84 -2.91 -0.02 2.48 15 19 H 0.11 2.59 8.06 -2.91 -0.02 2.57 15 20 H 0.09 3.68 8.06 -2.91 -0.02 3.66 15 21 H 0.09 3.34 6.98 -2.39 -0.02 3.32 15 22 H 0.11 3.25 7.79 -2.39 -0.02 3.23 15 23 H 0.22 5.48 8.06 -2.91 -0.02 5.46 15 24 H 0.15 5.63 8.06 -2.91 -0.02 5.60 15 25 H 0.02 0.83 6.95 -2.39 -0.02 0.82 15 26 H 0.02 1.35 8.14 -2.39 -0.02 1.33 15 27 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 Total: -1.00 -63.51 245.81 5.67 -57.84 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.14 Total: 11.19 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.16 Total: -30.32 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.65 Total: -83.91 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -63.51 5.67 -57.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213816148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.728 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds