Wall clock time and date at job start Mon Mar 30 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30951 * 1 3 3 Si 1.86806 * 119.99701 * 2 1 4 4 H 1.48500 * 109.46870 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47098 * 119.99908 * 3 2 1 6 6 H 1.48497 * 109.47003 * 239.99851 * 3 2 1 7 7 C 1.39955 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00202 * 355.20097 * 7 2 1 9 9 C 1.39928 * 119.99878 * 175.19608 * 7 2 1 10 10 C 1.37218 * 124.94083 * 190.43911 * 9 7 2 11 11 C 1.39270 * 114.74291 * 179.97438 * 10 9 7 12 12 C 1.48085 * 140.78260 * 179.97438 * 11 10 9 13 13 C 1.33858 * 106.85809 * 179.97438 * 12 11 10 14 14 N 1.36991 * 109.62606 * 0.02562 * 13 12 11 15 15 H 0.97005 * 125.03163 * 179.97438 * 14 13 12 16 16 C 1.37232 * 109.93208 * 359.97438 * 14 13 12 17 17 S 1.75556 * 124.94485 * 10.13899 * 9 7 2 18 18 H 0.97000 * 119.99726 * 179.51511 * 1 2 3 19 19 H 1.07998 * 122.63237 * 359.94058 * 10 9 7 20 20 H 1.08004 * 126.57431 * 0.02562 * 12 11 10 21 21 H 1.08000 * 125.18644 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 1.2783 2.7465 -0.0006 5 1 3.0972 1.6965 1.2125 6 1 3.0972 1.6965 -1.2125 7 6 2.0093 -1.2120 0.0005 8 1 1.4722 -2.1457 0.0792 9 6 3.4049 -1.2141 -0.1009 10 6 4.1757 -2.3291 -0.3142 11 6 5.5456 -2.0869 -0.3799 12 6 6.8288 -2.8002 -0.5735 13 6 7.7979 -1.8787 -0.5152 14 7 7.2458 -0.6433 -0.3013 15 1 7.7460 0.1839 -0.2215 16 6 5.8802 -0.7495 -0.2167 17 16 4.4240 0.2104 0.0186 18 1 -0.4850 -0.8400 -0.0071 19 1 3.7533 -3.3172 -0.4221 20 1 6.9581 -3.8607 -0.7323 21 1 8.8540 -2.0786 -0.6207 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213830720.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:52 Heat of formation + Delta-G solvation = 25.109538 kcal Electronic energy + Delta-G solvation = -9509.308651 eV Core-core repulsion = 7668.757726 eV Total energy + Delta-G solvation = -1840.550925 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 193.026 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.17822 -36.81775 -34.86166 -31.00755 -30.04194 -26.18971 -22.99634 -21.46428 -20.49571 -19.79247 -19.13785 -16.66382 -15.85514 -15.57625 -15.16253 -14.73628 -14.13964 -13.93265 -13.58334 -12.98586 -12.59637 -12.21823 -11.87829 -11.72542 -11.42297 -10.62130 -9.84674 -9.50693 -9.02294 -8.23459 -6.43385 0.50134 0.76388 1.26038 1.35880 1.43908 1.63636 1.77306 2.18478 2.45021 2.94653 3.08097 4.26671 4.60734 4.86309 5.10737 5.27531 5.32240 5.57282 5.67244 6.02388 6.07068 6.16755 6.44413 6.66659 7.01439 7.88313 Molecular weight = 193.03amu Principal moments of inertia in cm(-1) A = 0.071444 B = 0.014446 C = 0.012094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.823263 B = 1937.807111 C = 2314.671094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.017 3.983 3 Si 0.935 3.065 4 H -0.199 1.199 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.059 0.941 9 C 0.017 3.983 10 C -0.338 4.338 11 C -0.109 4.109 12 C -0.240 4.240 13 C 0.047 3.953 14 N -0.544 5.544 15 H 0.423 0.577 16 C -0.145 4.145 17 S 0.049 5.951 18 H 0.279 0.721 19 H 0.089 0.911 20 H 0.145 0.855 21 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.830 3.964 -0.331 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.198 4.198 3 Si 0.752 3.248 4 H -0.121 1.121 5 H -0.110 1.110 6 H -0.112 1.112 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.100 4.100 10 C -0.365 4.365 11 C -0.121 4.121 12 C -0.267 4.267 13 C -0.085 4.085 14 N -0.148 5.148 15 H 0.261 0.739 16 C -0.362 4.362 17 S 0.297 5.703 18 H 0.090 0.910 19 H 0.108 0.892 20 H 0.163 0.837 21 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.330 7.114 -0.106 13.379 hybrid contribution -0.206 -3.593 -0.158 3.602 sum 11.124 3.522 -0.264 11.671 Atomic orbital electron populations 1.70666 1.08029 1.32189 1.34905 1.28341 0.96102 1.05960 0.89397 0.84424 0.79951 0.74628 0.85759 1.12133 1.10966 1.11188 1.20000 0.90812 0.96171 1.46298 0.92295 1.21271 0.95999 0.93601 0.99151 1.19105 0.91797 0.97207 1.28375 1.19538 0.93481 0.93192 1.05876 1.21803 0.89420 0.99427 1.16095 1.22186 0.99534 0.82312 1.04434 1.40955 1.01999 1.09661 1.62210 0.73926 1.23794 0.89841 0.99055 1.23522 1.83851 0.94775 1.09686 1.82020 0.91005 0.89245 0.83702 0.76737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.81 13.67 21.84 0.30 -45.51 14 2 C 0.02 0.93 5.52 85.24 0.47 1.40 14 3 Si 0.94 38.92 24.49 68.60 1.68 40.60 14 4 H -0.20 -7.51 7.11 99.48 0.71 -6.81 14 5 H -0.18 -7.05 6.29 96.81 0.61 -6.44 14 6 H -0.19 -7.35 6.35 97.86 0.62 -6.73 14 7 C -0.50 -28.78 9.70 23.10 0.22 -28.56 14 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 14 9 C 0.02 0.94 5.96 22.44 0.13 1.07 14 10 C -0.34 -18.61 10.20 22.28 0.23 -18.38 14 11 C -0.11 -5.32 6.80 -20.27 -0.14 -5.46 14 12 C -0.24 -9.20 11.14 23.89 0.27 -8.93 14 13 C 0.05 1.38 11.83 82.89 0.98 2.36 14 14 N -0.54 -17.96 6.05 -188.85 -1.14 -19.10 14 15 H 0.42 10.31 8.96 -92.70 -0.83 9.48 14 16 C -0.14 -6.42 8.44 83.99 0.71 -5.71 14 17 S 0.05 2.23 15.31 -56.49 -0.86 1.37 14 18 H 0.28 15.28 8.72 -92.71 -0.81 14.47 14 19 H 0.09 4.98 8.06 -2.91 -0.02 4.96 14 20 H 0.15 4.87 8.06 -2.91 -0.02 4.85 14 21 H 0.22 3.73 8.06 -2.91 -0.02 3.71 14 Total: -1.00 -66.80 198.76 3.05 -63.76 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.20 Total: 21.08 kcal Atomic # 6 Polarization: -65.07 SS G_CDS: 2.87 Total: -62.20 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.84 Total: -64.61 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.68 Total: 40.60 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -0.86 Total: 1.37 kcal Total: -66.80 3.05 -63.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213830720.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.865 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds