Wall clock time and date at job start Mon Mar 30 2020 02:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31129 * 1 3 3 Si 1.86806 * 119.99550 * 2 1 4 4 H 1.48491 * 109.47354 * 273.99874 * 3 2 1 5 5 H 1.48497 * 109.47062 * 34.00275 * 3 2 1 6 6 H 1.48502 * 109.46623 * 153.99824 * 3 2 1 7 7 C 1.39592 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99628 * 190.80155 * 7 2 1 9 9 C 1.41144 * 119.99824 * 10.79760 * 7 2 1 10 10 C 1.39088 * 126.96619 * 6.93745 * 9 7 2 11 11 N 1.35189 * 108.75951 * 180.02562 * 10 9 7 12 12 H 0.96995 * 124.76415 * 179.97438 * 11 10 9 13 13 C 1.39979 * 110.46949 * 0.02562 * 11 10 9 14 14 C 1.40105 * 139.35897 * 180.02562 * 13 11 10 15 15 C 1.32777 * 115.66367 * 179.97438 * 14 13 11 16 16 S 1.75643 * 110.27013 * 0.02860 * 15 14 13 17 17 C 1.37165 * 107.69860 * 359.97438 * 13 11 10 18 18 H 0.96993 * 120.00278 * 359.97438 * 1 2 3 19 19 H 1.08000 * 125.62393 * 0.02630 * 10 9 7 20 20 H 1.08000 * 122.16587 * 0.02562 * 14 13 11 21 21 H 1.07991 * 124.86123 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2452 1.6179 0.0000 4 1 2.4081 2.0954 -1.3966 5 1 1.4874 2.6268 0.7830 6 1 3.5825 1.4173 0.6138 7 6 2.0093 -1.2089 -0.0005 8 1 3.0749 -1.2171 0.1747 9 6 1.3224 -2.4203 -0.2301 10 6 -0.0098 -2.5691 -0.6010 11 7 -0.2834 -3.8876 -0.7200 12 1 -1.1466 -4.2531 -0.9690 13 6 0.8539 -4.6514 -0.4324 14 6 1.2439 -5.9956 -0.3701 15 6 2.5088 -6.2122 -0.0294 16 16 3.3337 -4.6867 0.2492 17 6 1.8713 -3.7846 -0.1243 18 1 -0.4850 0.8400 0.0004 19 1 -0.7104 -1.7640 -0.7667 20 1 0.5602 -6.8033 -0.5859 21 1 2.9651 -7.1866 0.0630 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213830881.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:00 Heat of formation + Delta-G solvation = 59.107547 kcal Electronic energy + Delta-G solvation = -9494.263845 eV Core-core repulsion = 7655.187183 eV Total energy + Delta-G solvation = -1839.076661 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 193.026 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.20699 -34.39249 -33.12416 -29.47697 -26.64764 -24.81823 -21.70641 -19.62143 -18.93970 -17.18809 -15.79507 -14.55342 -14.31744 -13.71074 -13.15325 -12.86832 -12.50184 -11.40802 -11.19184 -11.06349 -10.75066 -10.50975 -9.96723 -9.92902 -9.69002 -9.23460 -8.11649 -6.79912 -6.56199 -6.46351 -3.95087 2.13940 2.71043 3.11158 3.21785 3.26922 3.28875 3.94305 4.14323 4.18968 4.55402 5.54394 5.77004 6.05228 6.48990 6.75862 6.91978 7.16569 7.38066 7.73935 7.78421 8.27196 8.66012 9.02972 9.16227 9.22019 10.55525 Molecular weight = 193.03amu Principal moments of inertia in cm(-1) A = 0.058320 B = 0.012433 C = 0.010334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.996611 B = 2251.510188 C = 2708.904260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.062 3.938 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.431 4.431 8 H 0.069 0.931 9 C 0.054 3.946 10 C -0.057 4.057 11 N -0.566 5.566 12 H 0.393 0.607 13 C -0.009 4.009 14 C -0.093 4.093 15 C -0.242 4.242 16 S 0.066 5.934 17 C -0.227 4.227 18 H 0.272 0.728 19 H 0.188 0.812 20 H 0.118 0.882 21 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -5.490 -0.896 5.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.465 4.465 8 H 0.088 0.912 9 C 0.045 3.955 10 C -0.188 4.188 11 N -0.167 5.167 12 H 0.226 0.774 13 C -0.122 4.122 14 C -0.127 4.127 15 C -0.377 4.377 16 S 0.325 5.675 17 C -0.351 4.351 18 H 0.083 0.917 19 H 0.205 0.795 20 H 0.135 0.865 21 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.899 -4.969 -0.499 5.343 hybrid contribution -1.518 0.167 -0.511 1.610 sum 0.381 -4.802 -1.010 4.922 Atomic orbital electron populations 1.69615 1.07050 1.27876 1.42559 1.25566 0.94789 1.00456 0.93980 0.86215 0.80157 0.81123 0.78608 1.19972 1.20721 1.19066 1.18678 0.95115 0.89488 1.43217 0.91234 1.17602 0.90692 0.87557 0.99645 1.23051 0.99254 0.82127 1.14359 1.41475 1.08763 1.06008 1.60482 0.77413 1.18061 0.88870 0.91411 1.13841 1.18819 0.95971 0.93255 1.04668 1.24743 0.97978 1.01066 1.13906 1.83188 1.13216 0.96229 1.74913 1.23793 0.94970 0.99111 1.17255 0.91739 0.79527 0.86460 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.28 10.59 55.53 0.59 -21.69 14 2 C 0.06 1.63 5.45 -17.35 -0.09 1.54 14 3 Si 0.91 20.05 29.57 -169.99 -5.03 15.03 14 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 14 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 14 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 7 C -0.43 -12.18 9.41 -37.97 -0.36 -12.53 14 8 H 0.07 1.94 7.86 -52.49 -0.41 1.52 14 9 C 0.05 1.51 6.08 -104.73 -0.64 0.88 14 10 C -0.06 -1.47 10.87 -15.76 -0.17 -1.65 14 11 N -0.57 -12.63 6.05 -9.94 -0.06 -12.69 14 12 H 0.39 7.08 8.96 -40.82 -0.37 6.71 14 13 C -0.01 -0.20 7.67 -83.83 -0.64 -0.85 14 14 C -0.09 -1.80 10.17 -40.75 -0.41 -2.22 14 15 C -0.24 -4.46 11.15 28.86 0.32 -4.14 14 16 S 0.07 1.41 23.31 -107.50 -2.51 -1.10 14 17 C -0.23 -5.80 7.49 -36.22 -0.27 -6.07 14 18 H 0.27 6.65 8.30 -40.82 -0.34 6.31 14 19 H 0.19 4.86 5.99 -52.49 -0.31 4.55 14 20 H 0.12 1.88 8.06 -52.49 -0.42 1.46 14 21 H 0.15 2.21 8.06 -52.49 -0.42 1.79 14 LS Contribution 206.36 15.07 3.11 3.11 Total: -1.00 -29.42 206.36 -7.23 -36.65 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -1.07 Total: 5.73 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -2.27 Total: -25.04 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.53 Total: -34.38 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.03 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.51 Total: -1.10 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -29.42 -7.23 -36.65 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213830881.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.759 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds