Wall clock time and date at job start Mon Mar 30 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31129 * 1 3 3 Si 1.86806 * 119.99550 * 2 1 4 4 H 1.48491 * 109.47354 * 273.99874 * 3 2 1 5 5 H 1.48497 * 109.47062 * 34.00275 * 3 2 1 6 6 H 1.48502 * 109.46623 * 153.99824 * 3 2 1 7 7 C 1.39592 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99628 * 190.80155 * 7 2 1 9 9 C 1.41144 * 119.99824 * 10.79760 * 7 2 1 10 10 C 1.39088 * 126.96619 * 6.93745 * 9 7 2 11 11 N 1.35189 * 108.75951 * 180.02562 * 10 9 7 12 12 H 0.96995 * 124.76415 * 179.97438 * 11 10 9 13 13 C 1.39979 * 110.46949 * 0.02562 * 11 10 9 14 14 C 1.40105 * 139.35897 * 180.02562 * 13 11 10 15 15 C 1.32777 * 115.66367 * 179.97438 * 14 13 11 16 16 S 1.75643 * 110.27013 * 0.02860 * 15 14 13 17 17 C 1.37165 * 107.69860 * 359.97438 * 13 11 10 18 18 H 0.96993 * 120.00278 * 359.97438 * 1 2 3 19 19 H 1.08000 * 125.62393 * 0.02630 * 10 9 7 20 20 H 1.08000 * 122.16587 * 0.02562 * 14 13 11 21 21 H 1.07991 * 124.86123 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2452 1.6179 0.0000 4 1 2.4081 2.0954 -1.3966 5 1 1.4874 2.6268 0.7830 6 1 3.5825 1.4173 0.6138 7 6 2.0093 -1.2089 -0.0005 8 1 3.0749 -1.2171 0.1747 9 6 1.3224 -2.4203 -0.2301 10 6 -0.0098 -2.5691 -0.6010 11 7 -0.2834 -3.8876 -0.7200 12 1 -1.1466 -4.2531 -0.9690 13 6 0.8539 -4.6514 -0.4324 14 6 1.2439 -5.9956 -0.3701 15 6 2.5088 -6.2122 -0.0294 16 16 3.3337 -4.6867 0.2492 17 6 1.8713 -3.7846 -0.1243 18 1 -0.4850 0.8400 0.0004 19 1 -0.7104 -1.7640 -0.7667 20 1 0.5602 -6.8033 -0.5859 21 1 2.9651 -7.1866 0.0630 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213830881.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:59 Heat of formation + Delta-G solvation = 40.667764 kcal Electronic energy + Delta-G solvation = -9495.063454 eV Core-core repulsion = 7655.187183 eV Total energy + Delta-G solvation = -1839.876270 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 193.026 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.00252 -36.12760 -35.01700 -31.39825 -28.44936 -26.75309 -23.36461 -21.55363 -20.68909 -18.95615 -17.80653 -16.35830 -15.97221 -15.30982 -14.94297 -14.57938 -14.37622 -13.28717 -13.00974 -12.84597 -12.43010 -12.16576 -11.85065 -11.74155 -11.46391 -11.16840 -9.92240 -8.56478 -8.44569 -8.40217 -5.99005 0.51816 1.06723 1.35702 1.41614 1.54483 1.60801 2.21020 2.24342 2.31634 2.82921 3.48644 4.33797 4.61867 4.86189 4.97434 5.26959 5.27690 5.54332 5.81993 5.89442 6.32613 6.69614 7.10550 7.15676 7.36990 8.59761 Molecular weight = 193.03amu Principal moments of inertia in cm(-1) A = 0.058320 B = 0.012433 C = 0.010334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.996611 B = 2251.510188 C = 2708.904260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.021 3.979 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.471 4.471 8 H 0.056 0.944 9 C 0.009 3.991 10 C -0.076 4.076 11 N -0.557 5.557 12 H 0.412 0.588 13 C 0.001 3.999 14 C -0.108 4.108 15 C -0.205 4.205 16 S 0.061 5.939 17 C -0.285 4.285 18 H 0.280 0.720 19 H 0.179 0.821 20 H 0.162 0.838 21 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -6.980 -0.977 7.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.207 4.207 11 N -0.160 5.160 12 H 0.249 0.751 13 C -0.114 4.114 14 C -0.142 4.142 15 C -0.340 4.340 16 S 0.319 5.681 17 C -0.409 4.409 18 H 0.090 0.910 19 H 0.195 0.805 20 H 0.179 0.821 21 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.165 -6.470 -0.590 6.848 hybrid contribution -1.581 0.453 -0.471 1.711 sum 0.584 -6.018 -1.061 6.138 Atomic orbital electron populations 1.69677 1.08098 1.29110 1.42305 1.26388 0.95744 1.03432 0.93093 0.85163 0.78640 0.76701 0.78947 1.19134 1.19367 1.19189 1.18869 0.94777 0.91143 1.45644 0.92605 1.18038 0.92145 0.88902 1.00880 1.22797 0.98748 0.83445 1.15710 1.41336 1.09749 1.04944 1.59936 0.75097 1.18729 0.88165 0.92889 1.11649 1.19181 0.97214 0.92417 1.05356 1.25374 0.97094 1.01436 1.10073 1.83117 1.12297 0.97698 1.75018 1.24183 0.97894 0.99070 1.19715 0.90992 0.80462 0.82101 0.78128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.77 10.59 21.78 0.23 -46.54 14 2 C 0.02 1.14 5.45 85.12 0.46 1.60 14 3 Si 0.98 41.79 29.57 68.60 2.03 43.82 14 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 14 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 14 7 C -0.47 -27.74 9.41 23.31 0.22 -27.52 14 8 H 0.06 3.28 7.86 -2.91 -0.02 3.26 14 9 C 0.01 0.54 6.08 -19.94 -0.12 0.42 14 10 C -0.08 -4.06 10.87 84.38 0.92 -3.15 14 11 N -0.56 -24.72 6.05 -185.37 -1.12 -25.85 14 12 H 0.41 14.47 8.96 -92.71 -0.83 13.64 14 13 C 0.00 0.03 7.67 38.04 0.29 0.33 14 14 C -0.11 -3.79 10.17 21.55 0.22 -3.57 14 15 C -0.21 -6.65 11.15 66.64 0.74 -5.91 14 16 S 0.06 2.53 23.31 -56.49 -1.32 1.21 14 17 C -0.29 -14.71 7.49 24.44 0.18 -14.53 14 18 H 0.28 13.84 8.30 -92.71 -0.77 13.07 14 19 H 0.18 9.63 5.99 -2.91 -0.02 9.61 14 20 H 0.16 4.25 8.06 -2.91 -0.02 4.22 14 21 H 0.20 4.52 8.06 -2.91 -0.02 4.50 14 Total: -1.00 -65.42 206.36 3.17 -62.25 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.43 Total: 17.42 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 2.92 Total: -52.32 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -0.89 Total: -72.39 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.32 Total: 1.21 kcal Total: -65.42 3.17 -62.25 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213830881.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.917 kcal (2) G-P(sol) polarization free energy of solvation -65.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds