Wall clock time and date at job start Mon Mar 30 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00142 * 2 1 4 4 C 1.50701 * 119.99509 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.76500 * 359.54402 * 4 2 1 6 6 C 1.52997 * 109.61712 * 239.09601 * 4 2 1 7 7 C 1.50125 * 110.06329 * 189.98081 * 6 4 2 8 8 C 1.33703 * 123.49336 * 17.83512 * 7 6 4 9 9 C 1.40078 * 118.24892 * 179.13076 * 8 7 6 10 10 H 1.08003 * 119.99967 * 151.32226 * 9 8 7 11 11 C 1.40311 * 119.99949 * 331.03726 * 9 8 7 12 12 N 1.30684 * 120.00227 * 159.64718 * 11 9 8 13 13 Si 1.86800 * 119.99950 * 339.65227 * 11 9 8 14 14 H 1.48501 * 109.47224 * 91.67282 * 13 11 9 15 15 H 1.48504 * 109.47154 * 211.67692 * 13 11 9 16 16 H 1.48507 * 109.47101 * 331.67672 * 13 11 9 17 17 C 1.50129 * 123.50238 * 358.84481 * 8 7 6 18 18 C 1.52990 * 110.11185 * 17.64163 * 17 8 7 19 19 H 1.08001 * 120.00449 * 179.97438 * 1 2 3 20 20 H 1.08006 * 119.99988 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46805 * 269.99846 * 3 2 1 22 22 H 1.08993 * 109.47355 * 30.00018 * 3 2 1 23 23 H 1.09000 * 109.46970 * 150.00261 * 3 2 1 24 24 H 1.09006 * 109.36003 * 310.37667 * 6 4 2 25 25 H 1.09007 * 109.36191 * 70.10483 * 6 4 2 26 26 H 1.07996 * 118.25741 * 197.60415 * 7 6 4 27 27 H 0.96999 * 120.00331 * 180.02562 * 12 11 9 28 28 H 1.08996 * 109.36108 * 137.83781 * 17 8 7 29 29 H 1.09000 * 109.36140 * 257.44483 * 17 8 7 30 30 H 1.09000 * 109.61937 * 69.63473 * 18 17 8 31 31 H 1.09003 * 109.61585 * 190.17739 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3593 -2.1372 0.0072 6 6 2.9612 -1.3806 1.2359 7 6 3.8917 -2.5536 1.1261 8 6 4.1570 -3.1796 -0.0252 9 6 5.0578 -4.2521 -0.0044 10 1 4.9670 -5.0477 -0.7290 11 6 6.0819 -4.2896 0.9541 12 7 6.6621 -5.4235 1.2464 13 14 6.6157 -2.7188 1.8126 14 1 5.8368 -2.5501 3.0655 15 1 8.0629 -2.7989 2.1362 16 1 6.3720 -1.5585 0.9182 17 6 3.5363 -2.7983 -1.3379 18 6 2.9462 -1.3895 -1.2514 19 1 -0.5401 -0.9353 -0.0004 20 1 -0.5400 0.9354 -0.0004 21 1 2.2452 1.6197 -1.0277 22 1 1.4745 2.0647 0.5138 23 1 3.0159 1.1747 0.5138 24 1 3.5412 -0.4613 1.3180 25 1 2.3422 -1.4978 2.1255 26 1 4.3753 -2.9084 2.0241 27 1 7.3697 -5.4496 1.9092 28 1 4.2968 -2.8244 -2.1183 29 1 2.7453 -3.5071 -1.5830 30 1 3.7520 -0.6589 -1.1805 31 1 2.3445 -1.1897 -2.1381 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238145322.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:43 Heat of formation + Delta-G solvation = -13.436239 kcal Electronic energy + Delta-G solvation = -12010.314838 eV Core-core repulsion = 10062.431671 eV Total energy + Delta-G solvation = -1947.883167 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 192.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79068 -36.63070 -34.70340 -31.63160 -31.28391 -28.15187 -26.65043 -23.75906 -22.95794 -20.02268 -19.13307 -17.79400 -17.19896 -15.90139 -15.30995 -15.05772 -14.85345 -14.46951 -14.25114 -13.74004 -13.51833 -13.35384 -13.06185 -12.61633 -12.37914 -12.23629 -12.03211 -11.96495 -11.42878 -11.24917 -11.07448 -10.58320 -9.77242 -9.32264 -8.78689 -6.41511 1.24463 1.32113 1.44476 1.46552 1.77285 2.21713 3.10046 3.90568 4.02762 4.15289 4.36056 4.50384 4.68532 4.78549 4.84165 4.90366 4.91540 5.02894 5.07040 5.13844 5.18234 5.23942 5.30215 5.35156 5.41299 5.57599 5.82971 5.91644 6.08060 6.16808 6.69606 6.83982 7.17617 8.29717 Molecular weight = 192.12amu Principal moments of inertia in cm(-1) A = 0.055446 B = 0.011319 C = 0.010333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.877029 B = 2473.045867 C = 2709.008562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.119 4.119 4 C -0.048 4.048 5 H 0.063 0.937 6 C -0.037 4.037 7 C -0.389 4.389 8 C 0.038 3.962 9 C -0.502 4.502 10 H 0.046 0.954 11 C 0.043 3.957 12 N -0.868 5.868 13 Si 0.981 3.019 14 H -0.278 1.278 15 H -0.293 1.293 16 H -0.250 1.250 17 C -0.080 4.080 18 C -0.094 4.094 19 H 0.093 0.907 20 H 0.114 0.886 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.286 0.714 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 12.322 -2.302 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.121 4.121 3 C -0.176 4.176 4 C -0.066 4.066 5 H 0.081 0.919 6 C -0.074 4.074 7 C -0.410 4.410 8 C 0.036 3.964 9 C -0.533 4.533 10 H 0.065 0.935 11 C -0.169 4.169 12 N -0.497 5.497 13 Si 0.807 3.193 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.174 1.174 17 C -0.117 4.117 18 C -0.131 4.131 19 H 0.112 0.888 20 H 0.132 0.868 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.719 12.133 -2.229 14.552 hybrid contribution 0.687 -0.386 0.597 0.989 sum -7.032 11.747 -1.631 13.788 Atomic orbital electron populations 1.23775 0.94751 1.02327 1.02942 1.21839 0.95651 0.95403 0.99228 1.20890 1.00103 0.93959 1.02639 1.20231 0.96193 0.94871 0.95316 0.91870 1.19888 0.95254 0.95558 0.96651 1.21913 1.14033 1.09184 0.95867 1.18331 0.92660 0.91954 0.93448 1.19422 1.13090 1.06872 1.13934 0.93533 1.26932 0.95301 1.00008 0.94619 1.69721 1.22534 1.28532 1.28877 0.85225 0.74941 0.80052 0.79090 1.20466 1.22078 1.17350 1.20435 0.99043 0.97010 0.95222 1.21472 0.98477 0.95747 0.97447 0.88832 0.86796 0.90606 0.90575 0.92603 0.93516 0.93713 0.92109 0.90381 0.91963 0.91949 0.92388 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.73 13.91 67.78 0.94 -3.79 16 2 C -0.12 -3.28 4.88 -16.49 -0.08 -3.36 16 3 C -0.12 -2.76 9.59 71.23 0.68 -2.08 16 4 C -0.05 -1.61 2.39 -11.43 -0.03 -1.64 16 5 H 0.06 2.23 7.78 -2.39 -0.02 2.21 16 6 C -0.04 -1.46 5.38 29.67 0.16 -1.30 16 7 C -0.39 -19.16 7.12 24.48 0.17 -18.98 16 8 C 0.04 1.93 5.09 -20.63 -0.10 1.82 16 9 C -0.50 -29.42 9.44 23.22 0.22 -29.20 16 10 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 11 C 0.04 2.48 5.28 85.37 0.45 2.93 16 12 N -0.87 -51.40 13.92 21.89 0.30 -51.10 16 13 Si 0.98 47.55 24.60 68.60 1.69 49.24 16 14 H -0.28 -13.40 6.60 99.48 0.66 -12.74 16 15 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 16 H -0.25 -11.86 7.08 99.48 0.70 -11.15 16 17 C -0.08 -3.31 5.75 29.67 0.17 -3.14 16 18 C -0.09 -3.19 5.02 30.70 0.15 -3.04 16 19 H 0.09 2.20 7.84 -2.91 -0.02 2.18 16 20 H 0.11 2.15 8.04 -2.91 -0.02 2.12 16 21 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 23 H 0.06 1.42 6.42 -2.39 -0.02 1.41 16 24 H 0.05 1.77 6.42 -2.38 -0.02 1.76 16 25 H 0.04 1.71 8.14 -2.38 -0.02 1.70 16 26 H 0.06 3.27 4.30 -2.91 -0.01 3.26 16 27 H 0.29 15.41 8.29 -92.71 -0.77 14.65 16 28 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.46 16 30 H 0.06 1.98 8.03 -2.39 -0.02 1.96 16 31 H 0.08 2.21 8.13 -2.39 -0.02 2.19 16 Total: -1.00 -61.72 247.06 5.77 -55.95 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.03 Total: 7.67 kcal Atomic # 6 Polarization: -64.50 SS G_CDS: 2.74 Total: -61.76 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.30 Total: -51.10 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.69 Total: 49.24 kcal Total: -61.72 5.77 -55.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238145322.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.514 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds