Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38276 * 119.99260 * 2 1 4 4 C 1.38326 * 120.24462 * 179.97438 * 3 2 1 5 5 C 1.38172 * 120.22852 * 0.28038 * 4 3 2 6 6 C 1.38883 * 119.98329 * 359.42081 * 5 4 3 7 7 N 1.39397 * 120.12461 * 180.29898 * 6 5 4 8 8 C 1.36804 * 119.99835 * 0.27871 * 7 6 5 9 9 H 1.08001 * 120.00036 * 359.97438 * 8 7 6 10 10 C 1.38752 * 120.00067 * 179.97438 * 8 7 6 11 11 N 1.31625 * 120.00134 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00019 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47333 * 89.99581 * 12 10 8 14 14 H 1.48500 * 109.47457 * 209.99896 * 12 10 8 15 15 H 1.48495 * 109.47240 * 329.99964 * 12 10 8 16 16 C 1.38655 * 119.99376 * 179.97438 * 2 1 3 17 17 N 1.39768 * 120.11576 * 0.02625 * 16 2 1 18 18 H 1.08998 * 109.46877 * 89.99934 * 1 2 3 19 19 H 1.09001 * 109.47461 * 210.00038 * 1 2 3 20 20 H 1.08998 * 109.47132 * 329.99919 * 1 2 3 21 21 H 1.07999 * 119.87859 * 359.97438 * 3 2 1 22 22 H 1.08002 * 119.88320 * 179.97438 * 4 3 2 23 23 H 1.08000 * 120.01319 * 179.72336 * 5 4 3 24 24 H 0.97000 * 120.00405 * 180.27240 * 7 6 5 25 25 H 0.97001 * 119.99788 * 180.02562 * 11 10 8 26 26 H 0.97001 * 119.99624 * 359.97438 * 17 16 2 27 27 H 0.96994 * 120.00246 * 179.97438 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1976 0.0000 4 6 3.5815 1.2037 0.0005 5 6 4.2823 0.0129 -0.0048 6 6 3.5977 -1.1954 0.0015 7 7 4.3019 -2.3985 0.0025 8 6 5.6699 -2.3903 0.0030 9 1 6.2043 -1.4518 0.0022 10 6 6.3709 -3.5877 0.0045 11 7 7.6871 -3.5799 0.0045 12 14 5.4466 -5.2110 0.0065 13 1 5.2016 -5.6429 -1.3930 14 1 6.2553 -6.2403 0.7078 15 1 4.1480 -5.0404 0.7063 16 6 2.2001 -1.2009 0.0005 17 7 1.5036 -2.4126 0.0005 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6561 2.1317 -0.0004 22 1 4.1154 2.1425 0.0001 23 1 5.3623 0.0218 -0.0088 24 1 3.8220 -3.2414 0.0028 25 1 8.1771 -4.4170 0.0052 26 1 0.5336 -2.4144 0.0005 27 1 1.9902 -3.2517 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238533939.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = 30.305687 kcal Electronic energy + Delta-G solvation = -11577.957380 eV Core-core repulsion = 9528.430662 eV Total energy + Delta-G solvation = -2049.526718 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.91321 -35.27278 -33.71696 -32.16014 -30.36621 -27.49735 -25.99038 -24.15449 -20.93112 -20.06380 -18.28057 -16.43192 -16.22207 -15.35394 -14.51189 -13.61226 -13.44011 -13.21932 -13.17651 -12.40854 -12.20099 -12.07702 -11.66018 -11.26948 -10.77922 -10.50310 -10.26464 -10.21977 -9.76015 -9.71165 -8.67798 -7.19626 -6.34626 -6.30648 -3.61104 2.45173 2.63140 3.02807 3.08119 3.12976 4.08547 4.50168 4.73271 4.99218 5.25804 5.59717 5.63485 5.99841 6.06639 6.14845 6.22028 6.45214 6.76176 7.02166 7.17379 7.22375 7.59150 7.75801 7.86727 7.96160 8.30940 8.41166 8.70270 9.37714 9.42518 10.78299 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.051342 B = 0.011698 C = 0.009577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.229210 B = 2392.960211 C = 2923.044356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.123 4.123 3 C -0.189 4.189 4 C -0.106 4.106 5 C -0.192 4.192 6 C 0.172 3.828 7 N -0.608 5.608 8 C -0.291 4.291 9 H 0.117 0.883 10 C 0.031 3.969 11 N -0.889 5.889 12 Si 0.882 3.118 13 H -0.272 1.272 14 H -0.277 1.277 15 H -0.273 1.273 16 C 0.107 3.893 17 N -0.892 5.892 18 H 0.055 0.945 19 H 0.050 0.950 20 H 0.057 0.943 21 H 0.099 0.901 22 H 0.102 0.898 23 H 0.120 0.880 24 H 0.370 0.630 25 H 0.272 0.728 26 H 0.389 0.611 27 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 2.483 -0.035 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.212 4.212 4 C -0.127 4.127 5 C -0.218 4.218 6 C 0.057 3.943 7 N -0.220 5.220 8 C -0.420 4.420 9 H 0.134 0.866 10 C -0.171 4.171 11 N -0.528 5.528 12 Si 0.709 3.291 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.199 1.199 16 C 0.003 3.997 17 N -0.437 5.437 18 H 0.074 0.926 19 H 0.069 0.931 20 H 0.076 0.924 21 H 0.117 0.883 22 H 0.120 0.880 23 H 0.138 0.862 24 H 0.204 0.796 25 H 0.083 0.917 26 H 0.217 0.783 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.506 2.324 -0.033 10.761 hybrid contribution -0.581 -1.642 0.025 1.742 sum -11.087 0.682 -0.008 11.108 Atomic orbital electron populations 1.20483 0.92929 1.01117 1.00770 1.18791 0.94089 0.91550 1.08466 1.20095 0.93788 0.95496 1.11816 1.20499 0.93704 0.96553 1.01931 1.20342 0.99485 0.90236 1.11752 1.17387 0.88306 0.87628 1.01003 1.40866 1.05706 1.03087 1.72352 1.19381 0.79513 0.96428 1.46702 0.86555 1.24930 0.95530 0.97998 0.98600 1.69697 1.05179 1.27617 1.50276 0.86612 0.79576 0.84159 0.78757 1.19743 1.20221 1.19859 1.16995 0.89225 0.86184 1.07262 1.42095 1.07827 1.04803 1.88982 0.92628 0.93094 0.92405 0.88286 0.88019 0.86181 0.79567 0.91715 0.78250 0.78921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.57 36.01 0.34 -0.99 15 2 C -0.12 -2.22 5.89 -104.45 -0.62 -2.84 15 3 C -0.19 -3.45 9.69 -39.54 -0.38 -3.84 15 4 C -0.11 -2.07 10.03 -39.57 -0.40 -2.47 15 5 C -0.19 -4.28 9.30 -39.37 -0.37 -4.65 15 6 C 0.17 3.92 6.64 -83.61 -0.56 3.36 15 7 N -0.61 -14.65 5.23 -9.48 -0.05 -14.70 15 8 C -0.29 -7.91 10.04 -15.14 -0.15 -8.07 15 9 H 0.12 3.35 5.91 -52.49 -0.31 3.04 15 10 C 0.03 0.85 5.50 -17.45 -0.10 0.76 15 11 N -0.89 -25.64 13.97 55.49 0.78 -24.87 15 12 Si 0.88 19.94 27.73 -169.99 -4.71 15.23 15 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 14 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 15 H -0.27 -5.76 6.52 56.52 0.37 -5.39 15 16 C 0.11 2.13 6.76 -83.52 -0.56 1.57 15 17 N -0.89 -14.84 8.98 32.55 0.29 -14.55 15 18 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.05 0.64 6.54 -51.93 -0.34 0.30 15 20 H 0.06 0.72 8.09 -51.93 -0.42 0.30 15 21 H 0.10 1.56 8.06 -52.49 -0.42 1.13 15 22 H 0.10 1.72 8.06 -52.49 -0.42 1.30 15 23 H 0.12 2.80 5.96 -52.49 -0.31 2.48 15 24 H 0.37 8.30 3.93 -40.82 -0.16 8.14 15 25 H 0.27 7.34 8.31 -40.82 -0.34 7.01 15 26 H 0.39 5.30 6.82 -40.82 -0.28 5.02 15 27 H 0.38 6.38 7.01 -40.82 -0.29 6.09 15 LS Contribution 226.89 15.07 3.42 3.42 Total: -1.00 -28.82 226.89 -5.61 -34.42 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -2.54 Total: 18.19 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.79 Total: -17.15 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 1.02 Total: -54.11 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.82 -5.61 -34.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238533939.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.729 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds