Wall clock time and date at job start Mon Mar 30 2020 01:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38904 * 119.66925 * 2 1 4 4 C 1.38631 * 120.55645 * 179.97438 * 3 2 1 5 5 N 1.40046 * 120.05276 * 180.02562 * 4 3 2 6 6 C 1.39409 * 119.89886 * 0.02562 * 4 3 2 7 7 N 1.38995 * 120.32006 * 179.97438 * 6 4 3 8 8 C 1.41341 * 119.35842 * 0.02562 * 6 4 3 9 9 C 1.41070 * 120.27679 * 180.02562 * 8 6 4 10 10 H 1.08002 * 119.99752 * 333.66633 * 9 8 6 11 11 C 1.39914 * 120.00082 * 153.65967 * 9 8 6 12 12 N 1.30890 * 119.99950 * 343.99923 * 11 9 8 13 13 Si 1.86805 * 119.99656 * 163.99733 * 11 9 8 14 14 H 1.48504 * 109.46881 * 94.96811 * 13 11 9 15 15 H 1.48503 * 109.46614 * 214.96493 * 13 11 9 16 16 H 1.48494 * 109.47113 * 334.96855 * 13 11 9 17 17 C 1.36396 * 119.67313 * 180.02562 * 2 1 3 18 18 H 1.09004 * 109.47049 * 269.99849 * 1 2 3 19 19 H 1.08999 * 109.47668 * 30.00079 * 1 2 3 20 20 H 1.09004 * 109.47224 * 149.99769 * 1 2 3 21 21 H 1.08001 * 119.72123 * 359.97438 * 3 2 1 22 22 H 0.97001 * 120.00193 * 179.97438 * 5 4 3 23 23 H 0.97007 * 119.99661 * 359.97438 * 5 4 3 24 24 H 0.96997 * 120.00349 * 180.02562 * 7 6 4 25 25 H 0.97005 * 119.99844 * 0.02722 * 7 6 4 26 26 H 0.96997 * 119.99720 * 179.97438 * 12 11 9 27 27 H 1.07994 * 119.95833 * 0.26701 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.2069 0.0000 4 6 3.5806 1.2284 0.0005 5 7 4.2631 2.4513 0.0011 6 6 4.2942 0.0308 0.0005 7 7 5.6841 0.0421 0.0005 8 6 3.5906 -1.1951 -0.0006 9 6 4.2931 -2.4184 0.0000 10 1 5.2894 -2.4691 -0.4138 11 6 3.6992 -3.5660 0.5366 12 7 2.6477 -3.4586 1.3087 13 14 4.4070 -5.2512 0.1512 14 1 5.3385 -5.6564 1.2345 15 1 3.3038 -6.2403 0.0513 16 1 5.1413 -5.1965 -1.1383 17 6 2.1822 -1.1851 -0.0005 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3634 -0.8900 -0.5139 21 1 1.6446 2.1364 -0.0004 22 1 5.2330 2.4655 0.0018 23 1 3.7659 3.2842 0.0007 24 1 6.1759 -0.7940 0.0002 25 1 6.1622 0.8861 0.0009 26 1 2.2358 -4.2542 1.6804 27 1 1.6362 -2.1169 -0.0053 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238560123.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:18 Heat of formation + Delta-G solvation = -6.900884 kcal Electronic energy + Delta-G solvation = -11703.092024 eV Core-core repulsion = 9651.951908 eV Total energy + Delta-G solvation = -2051.140116 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88392 -36.02598 -35.50345 -33.91102 -31.18516 -29.38452 -27.18141 -25.90419 -22.67250 -21.12968 -18.80579 -18.23737 -17.40207 -16.49208 -16.24955 -15.75144 -14.68296 -14.42180 -14.32271 -13.96772 -13.43260 -13.14117 -12.91324 -12.69329 -12.44916 -12.11301 -11.62172 -11.23489 -11.16162 -10.76977 -10.40344 -8.64629 -8.44582 -7.35303 -5.99630 1.14332 1.41909 1.51256 1.54491 1.62003 2.28871 2.92106 3.36804 3.78792 3.94918 4.58113 4.70351 4.92693 5.02849 5.16883 5.23581 5.39770 5.48488 5.72065 5.84134 6.09887 6.33542 6.43820 6.77066 6.89674 7.08200 7.13071 7.39198 7.49474 7.65937 8.54047 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.038522 B = 0.014055 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.689030 B = 1991.717026 C = 2636.702475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.102 4.102 3 C -0.261 4.261 4 C 0.149 3.851 5 N -0.881 5.881 6 C 0.028 3.972 7 N -0.877 5.877 8 C 0.055 3.945 9 C -0.493 4.493 10 H 0.073 0.927 11 C 0.031 3.969 12 N -0.837 5.837 13 Si 0.976 3.024 14 H -0.267 1.267 15 H -0.273 1.273 16 H -0.261 1.261 17 C -0.192 4.192 18 H 0.057 0.943 19 H 0.069 0.931 20 H 0.050 0.950 21 H 0.110 0.890 22 H 0.391 0.609 23 H 0.398 0.602 24 H 0.391 0.609 25 H 0.386 0.614 26 H 0.279 0.721 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 4.536 -1.837 5.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.285 4.285 4 C 0.044 3.956 5 N -0.426 5.426 6 C -0.076 4.076 7 N -0.424 5.424 8 C 0.049 3.951 9 C -0.525 4.525 10 H 0.091 0.909 11 C -0.181 4.181 12 N -0.465 5.465 13 Si 0.798 3.202 14 H -0.192 1.192 15 H -0.198 1.198 16 H -0.185 1.185 17 C -0.213 4.213 18 H 0.075 0.925 19 H 0.088 0.912 20 H 0.069 0.931 21 H 0.128 0.872 22 H 0.219 0.781 23 H 0.226 0.774 24 H 0.219 0.781 25 H 0.214 0.786 26 H 0.090 0.910 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.436 4.332 -1.696 4.869 hybrid contribution 0.713 -0.561 0.077 0.911 sum 2.149 3.771 -1.619 4.633 Atomic orbital electron populations 1.20553 0.91542 1.01477 1.01068 1.19298 0.95872 0.92907 1.02369 1.19851 0.91573 0.96585 1.20477 1.17167 0.91399 0.85082 1.01931 1.41909 1.07909 1.03928 1.88894 1.17609 0.84889 0.92068 1.13017 1.41434 1.02345 1.09006 1.89610 1.17417 0.92451 0.91429 0.93801 1.19360 1.02325 0.93748 1.37029 0.90943 1.26600 0.94769 1.04357 0.92379 1.69964 1.20279 1.32082 1.24148 0.85295 0.78561 0.76870 0.79475 1.19179 1.19777 1.18485 1.20554 0.94019 0.96163 1.10602 0.92468 0.91167 0.93139 0.87169 0.78115 0.77393 0.78120 0.78648 0.91033 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.48 9.99 71.23 0.71 -2.77 15 2 C -0.10 -4.93 5.84 -20.14 -0.12 -5.05 15 3 C -0.26 -11.71 9.52 22.52 0.21 -11.50 15 4 C 0.15 6.57 6.77 38.20 0.26 6.83 15 5 N -0.88 -28.87 9.09 -51.00 -0.46 -29.33 15 6 C 0.03 1.37 6.81 39.05 0.27 1.64 15 7 N -0.88 -35.35 8.97 -49.96 -0.45 -35.80 15 8 C 0.05 3.03 5.57 -21.18 -0.12 2.91 15 9 C -0.49 -26.97 8.49 23.37 0.20 -26.77 15 10 H 0.07 3.75 6.71 -2.91 -0.02 3.73 15 11 C 0.03 1.64 5.16 85.24 0.44 2.08 15 12 N -0.84 -46.00 10.97 21.83 0.24 -45.76 15 13 Si 0.98 39.91 29.59 68.60 2.03 41.94 15 14 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 15 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 17 C -0.19 -10.58 8.23 22.48 0.18 -10.39 15 18 H 0.06 2.12 8.14 -2.38 -0.02 2.10 15 19 H 0.07 2.31 8.08 -2.39 -0.02 2.30 15 20 H 0.05 1.92 8.07 -2.38 -0.02 1.90 15 21 H 0.11 4.28 8.06 -2.91 -0.02 4.25 15 22 H 0.39 11.11 7.02 -92.71 -0.65 10.46 15 23 H 0.40 10.93 8.85 -92.70 -0.82 10.11 15 24 H 0.39 15.76 7.07 -92.71 -0.66 15.10 15 25 H 0.39 12.59 7.01 -92.70 -0.65 11.94 15 26 H 0.28 14.05 8.30 -92.71 -0.77 13.28 15 27 H 0.09 5.41 6.23 -2.91 -0.02 5.39 15 Total: -1.00 -62.86 229.86 1.85 -61.01 By element: Atomic # 1 Polarization: 52.51 SS G_CDS: -1.54 Total: 50.96 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 2.04 Total: -43.03 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -0.67 Total: -110.89 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -62.86 1.85 -61.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238560123.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.109 kcal (2) G-P(sol) polarization free energy of solvation -62.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds