Wall clock time and date at job start Mon Mar 30 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48494 * 109.46964 * 90.00030 * 3 2 1 5 5 H 1.48497 * 109.47153 * 329.99768 * 3 2 1 6 6 H 1.48499 * 109.46908 * 209.99732 * 3 2 1 7 7 C 1.40164 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00385 * 15.78440 * 7 2 1 9 9 C 1.40239 * 119.99705 * 195.77755 * 7 2 1 10 10 C 1.39807 * 126.66164 * 19.87075 * 9 7 2 11 11 C 1.38704 * 107.53282 * 180.02562 * 10 9 7 12 12 N 1.31229 * 109.08281 * 359.97438 * 11 10 9 13 13 N 1.37461 * 126.66030 * 199.55493 * 9 7 2 14 14 C 1.46506 * 126.20056 * 0.02562 * 13 9 7 15 15 C 1.53782 * 113.61012 * 219.13586 * 14 13 9 16 16 C 1.53954 * 87.01785 * 220.04390 * 15 14 13 17 17 C 1.53781 * 113.61717 * 121.52789 * 14 13 9 18 18 H 0.96992 * 120.00396 * 174.99212 * 1 2 3 19 19 H 1.07998 * 126.23159 * 359.97303 * 10 9 7 20 20 H 1.08004 * 125.45504 * 180.02562 * 11 10 9 21 21 H 1.08997 * 112.84751 * 350.32761 * 14 13 9 22 22 H 1.08998 * 113.61712 * 334.56560 * 15 14 13 23 23 H 1.09002 * 113.61592 * 105.47017 * 15 14 13 24 24 H 1.08996 * 113.54462 * 270.81063 * 16 15 14 25 25 H 1.09002 * 113.74450 * 139.94247 * 16 15 14 26 26 H 1.08996 * 113.61473 * 254.52818 * 17 14 13 27 27 H 1.09001 * 113.60998 * 25.42857 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4891 2.0464 1.4000 5 1 1.4392 2.6527 -0.7001 6 1 3.5392 1.4401 -0.7000 7 6 2.0083 -1.2139 0.0005 8 1 1.4989 -2.1317 -0.2535 9 6 3.3711 -1.2367 0.3308 10 6 4.0753 -0.2570 1.0371 11 6 5.3922 -0.6806 1.1386 12 7 5.5163 -1.8428 0.5421 13 7 4.2725 -2.2294 0.0281 14 6 3.9849 -3.4655 -0.7038 15 6 4.7164 -4.6970 -0.1441 16 6 4.9447 -5.1253 -1.6051 17 6 4.8289 -3.6378 -1.9777 18 1 -0.4850 -0.8367 -0.0733 19 1 3.6683 0.6624 1.4312 20 1 6.1878 -0.1407 1.6306 21 1 2.9183 -3.6255 -0.8616 22 1 5.6358 -4.4541 0.3885 23 1 4.0688 -5.3733 0.4140 24 1 4.1409 -5.7406 -2.0092 25 1 5.9332 -5.5459 -1.7898 26 1 4.2720 -3.4602 -2.8977 27 1 5.7791 -3.1047 -1.9472 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258450164.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:42 Heat of formation + Delta-G solvation = 57.519250 kcal Electronic energy + Delta-G solvation = -11824.662322 eV Core-core repulsion = 9776.315672 eV Total energy + Delta-G solvation = -2048.346649 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.32092 -39.04720 -35.72856 -32.31744 -31.19557 -26.69986 -26.62962 -25.80634 -22.34897 -21.55949 -19.82322 -19.64011 -17.71121 -16.48223 -15.83471 -15.57974 -15.20541 -15.07360 -14.35689 -13.73835 -13.48382 -13.14717 -13.11564 -12.74437 -12.06402 -11.84695 -11.61322 -11.52864 -11.40411 -11.09301 -10.85792 -9.94258 -9.41281 -9.04148 -6.71764 1.16379 1.44404 1.69493 1.84072 2.14945 2.20674 2.28341 3.06678 3.54230 3.66314 3.80017 3.93755 4.31906 4.49174 4.69704 4.78357 4.89066 4.93616 4.98167 5.04413 5.20442 5.26027 5.37060 5.51166 5.70378 6.13715 6.38479 6.59794 6.90037 7.43828 7.97391 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045667 B = 0.013594 C = 0.011484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.991263 B = 2059.291024 C = 2437.674497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.029 3.971 3 Si 1.117 2.883 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.235 3.765 10 C -0.443 4.443 11 C 0.062 3.938 12 N -0.382 5.382 13 N -0.417 5.417 14 C 0.128 3.872 15 C -0.138 4.138 16 C -0.113 4.113 17 C -0.142 4.142 18 H 0.280 0.720 19 H 0.127 0.873 20 H 0.194 0.806 21 H 0.100 0.900 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -4.634 -2.485 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.188 4.188 3 Si 0.940 3.060 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.074 0.926 9 C 0.113 3.887 10 C -0.473 4.473 11 C -0.121 4.121 12 N -0.203 5.203 13 N -0.203 5.203 14 C 0.025 3.975 15 C -0.176 4.176 16 C -0.150 4.150 17 C -0.181 4.181 18 H 0.091 0.909 19 H 0.144 0.856 20 H 0.210 0.790 21 H 0.118 0.882 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.919 -4.132 -2.781 8.525 hybrid contribution -1.008 -1.107 0.319 1.531 sum 5.911 -5.238 -2.462 8.273 Atomic orbital electron populations 1.70612 1.08108 1.32595 1.34617 1.28111 0.95607 1.06324 0.88728 0.83026 0.74040 0.70090 0.78857 1.18710 1.21156 1.19242 1.19712 0.92919 0.96846 1.48125 0.92584 1.19118 0.90507 0.87859 0.91229 1.21434 0.96310 1.06373 1.23179 1.23512 0.96899 0.93722 0.97993 1.76750 1.02974 1.17136 1.23432 1.48950 1.05259 1.17839 1.48289 1.22829 0.99455 0.81652 0.93550 1.23279 1.00622 0.95230 0.98458 1.22670 1.03914 0.94529 0.93914 1.23306 0.99895 0.98282 0.96586 0.90928 0.85601 0.78953 0.88169 0.90286 0.90647 0.87903 0.89005 0.90715 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.57 13.65 21.87 0.30 -45.28 15 2 C 0.03 1.56 5.51 85.32 0.47 2.03 15 3 Si 1.12 50.36 24.93 68.60 1.71 52.07 15 4 H -0.26 -11.02 6.61 99.48 0.66 -10.36 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 6 H -0.27 -12.24 6.66 99.48 0.66 -11.58 15 7 C -0.54 -30.04 9.37 23.22 0.22 -29.82 15 8 H 0.06 3.20 7.29 -2.91 -0.02 3.18 15 9 C 0.23 12.58 6.29 39.13 0.25 12.83 15 10 C -0.44 -22.31 8.17 22.76 0.19 -22.13 15 11 C 0.06 2.80 11.93 84.89 1.01 3.82 15 12 N -0.38 -18.15 12.01 -57.58 -0.69 -18.84 15 13 N -0.42 -20.39 3.76 -316.40 -1.19 -21.57 15 14 C 0.13 5.11 4.58 45.52 0.21 5.32 15 15 C -0.14 -4.44 7.78 31.18 0.24 -4.20 15 16 C -0.11 -2.83 8.09 31.18 0.25 -2.58 15 17 C -0.14 -4.68 7.88 31.12 0.25 -4.44 15 18 H 0.28 14.99 8.73 -92.71 -0.81 14.19 15 19 H 0.13 6.07 4.29 -2.91 -0.01 6.06 15 20 H 0.19 6.85 8.06 -2.91 -0.02 6.82 15 21 H 0.10 4.10 7.15 -2.39 -0.02 4.08 15 22 H 0.08 2.80 7.75 -2.39 -0.02 2.78 15 23 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 24 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15 Total: -1.00 -62.13 228.29 4.24 -57.89 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.03 Total: 14.91 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 3.08 Total: -39.18 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -1.58 Total: -85.69 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 1.71 Total: 52.07 kcal Total: -62.13 4.24 -57.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258450164.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.407 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds