Wall clock time and date at job start Mon Mar 30 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31034 * 1 3 3 Si 1.86799 * 119.99808 * 2 1 4 4 H 1.48502 * 109.46990 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47373 * 120.00066 * 3 2 1 6 6 H 1.48507 * 109.46795 * 240.00354 * 3 2 1 7 7 C 1.39697 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00114 * 156.76890 * 7 2 1 9 9 C 1.41600 * 119.99728 * 336.76142 * 7 2 1 10 10 C 1.41882 * 126.55640 * 341.05849 * 9 7 2 11 11 N 1.30316 * 108.04485 * 179.87729 * 10 9 7 12 12 N 1.39875 * 109.23451 * 0.39310 * 11 10 9 13 13 C 1.46493 * 125.67934 * 179.76501 * 12 11 10 14 14 C 1.53782 * 113.61841 * 194.10972 * 13 12 11 15 15 C 1.53949 * 87.02206 * 220.05342 * 14 13 12 16 16 C 1.53779 * 87.11399 * 25.36245 * 15 14 13 17 17 C 1.34508 * 108.64581 * 359.74634 * 12 11 10 18 18 H 0.97000 * 119.99495 * 173.98317 * 1 2 3 19 19 H 1.08006 * 125.97992 * 0.03867 * 10 9 7 20 20 H 1.08998 * 112.85449 * 325.31464 * 13 12 11 21 21 H 1.09008 * 113.61303 * 334.57190 * 14 13 12 22 22 H 1.09002 * 113.61668 * 105.46873 * 14 13 12 23 23 H 1.09004 * 113.53938 * 270.80724 * 15 14 13 24 24 H 1.09000 * 113.74310 * 139.94850 * 15 14 13 25 25 H 1.08999 * 113.61265 * 220.09032 * 16 15 14 26 26 H 1.08995 * 113.61240 * 89.18983 * 16 15 14 27 27 H 1.07996 * 126.40795 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 1.2792 2.7464 -0.0006 5 1 3.0980 1.6965 1.2124 6 1 3.0980 1.6964 -1.2126 7 6 2.0089 -1.2098 -0.0005 8 1 3.0231 -1.2475 -0.3695 9 6 1.3870 -2.3865 0.4828 10 6 0.2466 -2.4552 1.3241 11 7 -0.0183 -3.7122 1.5431 12 7 0.9222 -4.5043 0.8765 13 6 0.9642 -5.9687 0.8828 14 6 2.2875 -6.5494 0.3569 15 6 1.4418 -7.6233 -0.3512 16 6 0.2854 -6.6097 -0.3392 17 6 1.7816 -3.6978 0.2282 18 1 -0.4849 -0.8355 -0.0881 19 1 -0.3068 -1.6131 1.7128 20 1 0.6465 -6.3971 1.8334 21 1 2.8136 -5.8855 -0.3291 22 1 2.9322 -6.9467 1.1409 23 1 1.2558 -8.5052 0.2619 24 1 1.7952 -7.8708 -1.3522 25 1 -0.6839 -7.0557 -0.1164 26 1 0.2632 -5.9624 -1.2159 27 1 2.6204 -4.0087 -0.3768 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258559949.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:12 Heat of formation + Delta-G solvation = 64.902277 kcal Electronic energy + Delta-G solvation = -11584.931555 eV Core-core repulsion = 9536.905057 eV Total energy + Delta-G solvation = -2048.026497 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62910 -39.20525 -35.57116 -31.93615 -30.88591 -27.12583 -26.57446 -25.49360 -22.10795 -21.57100 -19.97135 -19.63683 -17.55529 -16.59284 -15.69222 -15.49644 -15.13116 -14.92466 -14.23872 -13.67590 -13.58687 -13.06157 -12.83206 -12.69223 -12.20610 -11.93242 -11.80647 -11.55080 -11.43162 -11.00774 -10.75318 -9.93843 -9.28493 -8.91616 -6.08617 1.21728 1.56015 1.59642 1.86102 2.03524 2.23779 2.50176 3.34542 3.42672 3.58234 3.82106 3.85462 4.25054 4.33472 4.61456 4.71066 4.72062 4.90316 4.98475 5.01123 5.18504 5.35963 5.40679 5.73624 6.05524 6.16366 6.64332 6.87275 7.11017 7.32588 8.37501 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.078421 B = 0.009073 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.962719 B = 3085.212329 C = 3259.445385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C -0.005 4.005 3 Si 1.120 2.880 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.062 0.938 9 C -0.065 4.065 10 C -0.031 4.031 11 N -0.336 5.336 12 N -0.359 5.359 13 C 0.119 3.881 14 C -0.138 4.138 15 C -0.112 4.112 16 C -0.151 4.151 17 C -0.101 4.101 18 H 0.272 0.728 19 H 0.154 0.846 20 H 0.116 0.884 21 H 0.081 0.919 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.341 -10.809 -0.866 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.214 4.214 3 Si 0.939 3.061 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.080 0.920 9 C -0.075 4.075 10 C -0.215 4.215 11 N -0.161 5.161 12 N -0.147 5.147 13 C 0.017 3.983 14 C -0.177 4.177 15 C -0.150 4.150 16 C -0.190 4.190 17 C -0.244 4.244 18 H 0.084 0.916 19 H 0.171 0.829 20 H 0.134 0.866 21 H 0.100 0.900 22 H 0.112 0.888 23 H 0.129 0.871 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.347 -10.100 -0.226 10.643 hybrid contribution 0.369 -0.881 -0.417 1.042 sum 3.716 -10.981 -0.644 11.611 Atomic orbital electron populations 1.70685 1.08774 1.31959 1.38023 1.28118 0.95849 1.06891 0.90524 0.82951 0.74451 0.70152 0.78545 1.20249 1.19319 1.18663 1.19765 1.01435 0.94104 1.43901 0.91973 1.18629 0.96311 0.93653 0.98955 1.23747 1.01455 0.93615 1.02687 1.76349 1.15201 1.03425 1.21079 1.47969 1.21486 1.05647 1.39572 1.23210 1.00698 0.73895 1.00464 1.23384 0.95160 0.98100 1.01036 1.22693 0.93824 0.96109 1.02370 1.23413 1.00097 0.98505 0.96982 1.22492 1.02672 0.89798 1.09393 0.91613 0.82924 0.86642 0.90006 0.88788 0.87131 0.89120 0.90077 0.91755 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.90 12.66 21.79 0.28 -50.63 15 2 C 0.00 -0.26 5.28 85.16 0.45 0.19 15 3 Si 1.12 47.02 29.99 68.60 2.06 49.08 15 4 H -0.28 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 7 C -0.56 -32.29 9.31 23.45 0.22 -32.07 15 8 H 0.06 3.47 7.94 -2.91 -0.02 3.45 15 9 C -0.07 -3.73 5.55 -21.30 -0.12 -3.85 15 10 C -0.03 -1.75 10.01 85.82 0.86 -0.89 15 11 N -0.34 -17.53 12.47 -55.93 -0.70 -18.23 15 12 N -0.36 -16.28 3.78 -321.99 -1.22 -17.49 15 13 C 0.12 3.85 5.01 45.52 0.23 4.08 15 14 C -0.14 -3.40 7.45 31.18 0.23 -3.17 15 15 C -0.11 -2.13 8.09 31.18 0.25 -1.88 15 16 C -0.15 -4.13 7.88 31.12 0.25 -3.88 15 17 C -0.10 -4.96 10.75 84.53 0.91 -4.05 15 18 H 0.27 16.63 6.25 -92.71 -0.58 16.05 15 19 H 0.15 8.79 6.92 -2.91 -0.02 8.77 15 20 H 0.12 3.45 8.14 -2.39 -0.02 3.43 15 21 H 0.08 2.22 6.29 -2.38 -0.01 2.21 15 22 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.11 1.54 8.14 -2.38 -0.02 1.52 15 24 H 0.09 1.48 8.14 -2.39 -0.02 1.47 15 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 27 H 0.17 7.21 6.67 -2.91 -0.02 7.19 15 Total: -1.00 -67.84 232.44 5.04 -62.80 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.35 Total: 19.99 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 3.27 Total: -45.52 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.64 Total: -86.35 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.06 Total: 49.08 kcal Total: -67.84 5.04 -62.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258559949.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.699 kcal (2) G-P(sol) polarization free energy of solvation -67.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds