Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48501 * 109.46950 * 269.99607 * 3 2 1 5 5 H 1.48496 * 109.47148 * 29.99538 * 3 2 1 6 6 H 1.48500 * 109.47037 * 149.99934 * 3 2 1 7 7 C 1.37875 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47106 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.39171 * 119.99627 * 180.02562 * 11 10 9 13 13 C 1.39475 * 120.86269 * 180.02562 * 12 11 10 14 14 C 1.37894 * 119.06903 * 179.97438 * 13 12 11 15 15 N 1.31994 * 120.84374 * 0.02562 * 14 13 12 16 16 C 1.31997 * 121.90732 * 359.95698 * 15 14 13 17 17 C 1.37890 * 120.84284 * 0.04146 * 16 15 14 18 18 H 0.97003 * 120.00217 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46829 * 59.99774 * 9 7 2 20 20 H 1.09002 * 109.47140 * 299.99545 * 9 7 2 21 21 H 1.09000 * 109.47317 * 60.00248 * 10 9 7 22 22 H 1.08999 * 109.47477 * 300.00326 * 10 9 7 23 23 H 0.96991 * 119.99840 * 359.97438 * 11 10 9 24 24 H 1.08008 * 120.46396 * 359.69528 * 13 12 11 25 25 H 1.08003 * 119.58026 * 179.97438 * 14 13 12 26 26 H 1.07998 * 119.57610 * 180.02562 * 16 15 14 27 27 H 1.08007 * 120.46713 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.2086 -6.1361 0.0003 13 6 1.5296 -7.3543 -0.0008 14 6 2.2562 -8.5263 -0.0008 15 7 3.5759 -8.5044 0.0006 16 6 4.2549 -7.3724 0.0014 17 6 3.6032 -6.1572 0.0015 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6240 -2.5568 0.8903 21 1 2.8719 -3.6044 0.8905 22 1 2.8719 -3.6044 -0.8894 23 1 0.5428 -4.9308 0.0000 24 1 0.4498 -7.3794 0.0030 25 1 1.7388 -9.4744 -0.0013 26 1 5.3345 -7.3984 0.0022 27 1 4.1648 -5.2346 0.0025 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258949836.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = 0.918402 kcal Electronic energy + Delta-G solvation = -11014.383585 eV Core-core repulsion = 8963.582539 eV Total energy + Delta-G solvation = -2050.801046 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.92035 -37.63665 -35.23433 -32.76170 -31.94552 -30.06106 -26.64797 -24.52558 -23.41428 -22.37068 -18.97028 -18.18946 -17.30707 -16.52498 -16.41757 -15.93217 -15.33058 -15.11908 -14.62700 -14.36785 -14.20212 -13.29830 -13.12242 -12.58223 -12.49995 -12.27496 -11.60320 -11.49439 -11.41746 -10.60816 -10.31693 -10.00933 -8.71709 -8.26433 -6.37720 0.36606 0.69423 1.41187 1.41645 1.52909 2.32844 2.54088 3.08403 3.08832 3.76156 3.97602 4.21431 4.36339 4.46764 4.47965 4.68411 4.83184 4.97869 5.05413 5.21148 5.36003 5.54360 5.69625 5.84266 6.08164 6.29763 6.71815 6.79713 7.26410 7.32432 8.85778 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.090404 B = 0.006516 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.647264 B = 4295.765818 C = 4584.967329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.020 3.980 10 C 0.143 3.857 11 N -0.731 5.731 12 C 0.238 3.762 13 C -0.261 4.261 14 C 0.130 3.870 15 N -0.557 5.557 16 C 0.132 3.868 17 C -0.268 4.268 18 H 0.265 0.735 19 H 0.001 0.999 20 H 0.001 0.999 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.404 0.596 24 H 0.146 0.854 25 H 0.180 0.820 26 H 0.174 0.826 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 -11.098 0.003 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.018 4.018 10 C 0.019 3.981 11 N -0.357 5.357 12 C 0.123 3.877 13 C -0.286 4.286 14 C -0.025 4.025 15 N -0.271 5.271 16 C -0.023 4.023 17 C -0.294 4.294 18 H 0.074 0.926 19 H 0.019 0.981 20 H 0.019 0.981 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.239 0.761 24 H 0.164 0.836 25 H 0.197 0.803 26 H 0.192 0.808 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.934 -11.572 0.008 12.580 hybrid contribution -0.849 1.959 -0.009 2.135 sum 4.085 -9.613 -0.001 10.445 Atomic orbital electron populations 1.70080 1.07788 1.28012 1.51115 1.25945 0.95768 1.03398 0.94441 0.85405 0.78682 0.78216 0.78516 1.19781 1.20859 1.18582 1.21491 0.93796 0.91639 1.51352 0.91569 1.19119 0.94487 0.92388 0.95782 1.21319 0.95063 0.81768 0.99904 1.44994 1.08846 1.02897 1.79007 1.18493 0.92429 0.86851 0.89881 1.21817 1.01945 0.91552 1.13330 1.22877 0.89574 0.98252 0.91775 1.67763 1.09733 1.30630 1.18966 1.22798 1.01072 0.86642 0.91790 1.21816 0.93091 1.00910 1.13552 0.92617 0.98070 0.98054 0.92864 0.92853 0.76130 0.83634 0.80344 0.80847 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.29 21.45 0.28 -54.36 15 2 C 0.00 0.17 5.46 84.65 0.46 0.63 15 3 Si 0.97 42.72 29.54 68.60 2.03 44.74 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 15 7 C -0.54 -29.53 9.11 25.60 0.23 -29.29 15 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 15 9 C 0.02 0.98 5.09 29.85 0.15 1.13 15 10 C 0.14 5.64 4.89 86.38 0.42 6.06 15 11 N -0.73 -24.82 5.72 -338.88 -1.94 -26.76 15 12 C 0.24 7.40 6.70 38.57 0.26 7.66 15 13 C -0.26 -6.89 10.00 22.49 0.22 -6.67 15 14 C 0.13 3.24 11.17 84.59 0.94 4.18 15 15 N -0.56 -15.65 10.36 -196.16 -2.03 -17.68 15 16 C 0.13 3.54 11.17 84.59 0.94 4.49 15 17 C -0.27 -7.96 9.38 22.48 0.21 -7.75 15 18 H 0.27 14.65 8.31 -92.71 -0.77 13.88 15 19 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 20 H 0.00 0.06 8.14 -2.39 -0.02 0.04 15 21 H 0.05 2.08 7.99 -2.39 -0.02 2.06 15 22 H 0.05 2.08 8.00 -2.39 -0.02 2.06 15 23 H 0.40 13.00 8.50 -92.71 -0.79 12.21 15 24 H 0.15 3.19 8.06 -2.91 -0.02 3.17 15 25 H 0.18 3.15 8.06 -2.91 -0.02 3.12 15 26 H 0.17 3.55 8.06 -2.91 -0.02 3.52 15 27 H 0.13 3.81 6.90 -2.91 -0.02 3.79 15 Total: -1.00 -61.75 241.08 2.57 -59.19 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.37 Total: 14.43 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.85 Total: -19.56 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.69 Total: -98.80 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -61.75 2.57 -59.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258949836.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.106 kcal (2) G-P(sol) polarization free energy of solvation -61.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds