Wall clock time and date at job start Mon Mar 30 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38596 * 120.44676 * 2 1 4 4 C 1.38592 * 118.39880 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.44386 * 179.97438 * 4 3 2 6 6 N 1.32329 * 119.10609 * 0.02562 * 4 3 2 7 7 C 1.31796 * 120.81644 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.11883 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47001 * 90.00116 * 8 7 6 10 10 H 1.08005 * 119.99817 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00081 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99848 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00321 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46855 * 90.00279 * 13 11 9 15 15 H 1.48499 * 109.47326 * 210.00609 * 13 11 9 16 16 H 1.48497 * 109.46885 * 330.00481 * 13 11 9 17 17 N 1.31793 * 121.75561 * 0.25858 * 7 6 4 18 18 H 1.08995 * 109.47509 * 89.99827 * 1 2 3 19 19 H 1.09000 * 109.46901 * 210.00128 * 1 2 3 20 20 H 1.09004 * 109.47113 * 329.99533 * 1 2 3 21 21 H 1.08002 * 120.79705 * 0.04300 * 3 2 1 22 22 H 1.09001 * 109.46754 * 270.01860 * 5 4 3 23 23 H 1.08996 * 109.47340 * 30.02377 * 5 4 3 24 24 H 1.09004 * 109.46949 * 150.02764 * 5 4 3 25 25 H 1.09000 * 109.46646 * 209.99574 * 8 7 6 26 26 H 1.09000 * 109.47248 * 330.00292 * 8 7 6 27 27 H 0.96998 * 119.99944 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1948 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4165 -0.0012 6 7 4.1964 -0.0331 -0.0016 7 6 3.4955 -1.1493 -0.0015 8 6 4.2205 -2.4705 -0.0033 9 6 4.4638 -2.9119 1.4169 10 1 4.1274 -2.2969 2.2387 11 6 5.1157 -4.1007 1.6673 12 7 5.5257 -4.8492 0.6667 13 14 5.4179 -4.6475 3.4277 14 1 4.2702 -5.4654 3.8959 15 1 6.6607 -5.4581 3.4879 16 1 5.5629 -3.4536 4.2989 17 7 2.1776 -1.1408 -0.0056 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6898 2.1417 0.0007 22 1 4.5984 2.7228 -1.0290 23 1 3.8489 3.2010 0.5131 24 1 5.3503 2.2448 0.5119 25 1 3.6144 -3.2168 -0.5169 26 1 5.1750 -2.3605 -0.5181 27 1 5.9847 -5.6854 0.8428 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259076616.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:23 Heat of formation + Delta-G solvation = 26.709571 kcal Electronic energy + Delta-G solvation = -11340.295337 eV Core-core repulsion = 9290.612679 eV Total energy + Delta-G solvation = -2049.682657 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.40195 -34.21144 -33.96136 -32.31122 -28.87345 -28.60813 -27.03809 -23.98700 -21.15112 -20.91216 -17.04496 -16.40154 -15.23896 -14.78176 -14.59298 -14.05940 -13.23772 -12.86722 -12.62199 -12.56444 -12.16505 -11.85656 -11.72949 -11.31637 -10.84435 -10.63858 -10.31108 -9.67804 -9.63062 -9.51657 -8.52125 -8.48814 -8.40176 -6.03733 -4.05880 1.60767 1.71642 3.33636 3.38660 3.43471 4.34399 4.54706 4.65598 4.66309 4.90100 5.33251 5.43965 5.53001 5.53419 5.69201 5.73178 5.78347 5.95624 6.19806 6.27476 6.39789 7.14782 7.51499 7.53984 7.82122 7.90642 8.25508 8.93670 9.02565 9.55589 11.07454 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042326 B = 0.009897 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.372339 B = 2828.558629 C = 3084.728038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.167 3.833 3 C -0.265 4.265 4 C 0.167 3.833 5 C -0.101 4.101 6 N -0.523 5.523 7 C 0.368 3.632 8 C 0.079 3.921 9 C -0.504 4.504 10 H 0.053 0.947 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.901 3.099 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.523 5.523 18 H 0.078 0.922 19 H 0.080 0.920 20 H 0.072 0.928 21 H 0.133 0.867 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 11.760 -1.325 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.020 3.980 3 C -0.287 4.287 4 C 0.020 3.980 5 C -0.159 4.159 6 N -0.239 5.239 7 C 0.104 3.896 8 C 0.041 3.959 9 C -0.543 4.543 10 H 0.071 0.929 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.728 3.272 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.239 5.239 18 H 0.096 0.904 19 H 0.099 0.901 20 H 0.091 0.909 21 H 0.151 0.849 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.880 10.726 -1.380 12.309 hybrid contribution -0.296 0.522 0.961 1.133 sum -6.176 11.248 -0.419 12.839 Atomic orbital electron populations 1.20697 0.88812 1.03399 1.02947 1.21723 0.97236 0.88772 0.90244 1.22295 0.95781 0.99770 1.10900 1.21723 0.91419 0.94592 0.90244 1.20698 1.00127 0.92089 1.02943 1.68308 1.41756 0.98128 1.15695 1.24422 0.85832 0.95602 0.83790 1.18244 0.94838 0.83881 0.98965 1.20780 1.37577 1.05387 0.90552 0.92873 1.24930 0.95395 0.96229 0.97537 1.69949 1.39209 1.13343 1.30658 0.86446 0.77700 0.78624 0.84389 1.20507 1.21003 1.19921 1.68308 1.10623 1.29261 1.15715 0.90355 0.90143 0.90887 0.84946 0.90357 0.90886 0.90139 0.93405 0.93399 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.22 36.01 0.37 -0.95 15 2 C 0.17 3.04 6.82 -82.24 -0.56 2.48 15 3 C -0.27 -4.32 9.54 -39.32 -0.38 -4.70 15 4 C 0.17 3.04 6.82 -82.24 -0.56 2.48 15 5 C -0.10 -1.32 10.22 36.01 0.37 -0.95 15 6 N -0.52 -11.97 10.27 -6.99 -0.07 -12.04 15 7 C 0.37 9.13 6.83 -157.19 -1.07 8.05 15 8 C 0.08 2.20 5.41 -29.03 -0.16 2.05 15 9 C -0.50 -14.90 9.09 -34.44 -0.31 -15.21 15 10 H 0.05 1.59 7.74 -52.48 -0.41 1.18 15 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 12 N -0.89 -26.86 13.29 55.43 0.74 -26.13 15 13 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 15 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 15 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 17 N -0.52 -11.97 10.27 -6.99 -0.07 -12.04 15 18 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.07 0.74 8.10 -51.93 -0.42 0.32 15 21 H 0.13 1.61 8.06 -52.49 -0.42 1.18 15 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.07 0.74 8.10 -51.93 -0.42 0.32 15 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.05 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.05 1.38 8.14 -51.93 -0.42 0.96 15 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 LS Contribution 244.26 15.07 3.68 3.68 Total: -1.00 -32.77 244.26 -6.49 -39.26 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -3.34 Total: -4.82 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.40 Total: -5.07 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.59 Total: -50.21 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.77 -6.49 -39.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259076616.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.968 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds