Wall clock time and date at job start Mon Mar 30 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38596 * 120.44676 * 2 1 4 4 C 1.38592 * 118.39880 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.44386 * 179.97438 * 4 3 2 6 6 N 1.32329 * 119.10609 * 0.02562 * 4 3 2 7 7 C 1.31796 * 120.81644 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.11883 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47001 * 90.00116 * 8 7 6 10 10 H 1.08005 * 119.99817 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00081 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99848 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00321 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46855 * 90.00279 * 13 11 9 15 15 H 1.48499 * 109.47326 * 210.00609 * 13 11 9 16 16 H 1.48497 * 109.46885 * 330.00481 * 13 11 9 17 17 N 1.31793 * 121.75561 * 0.25858 * 7 6 4 18 18 H 1.08995 * 109.47509 * 89.99827 * 1 2 3 19 19 H 1.09000 * 109.46901 * 210.00128 * 1 2 3 20 20 H 1.09004 * 109.47113 * 329.99533 * 1 2 3 21 21 H 1.08002 * 120.79705 * 0.04300 * 3 2 1 22 22 H 1.09001 * 109.46754 * 270.01860 * 5 4 3 23 23 H 1.08996 * 109.47340 * 30.02377 * 5 4 3 24 24 H 1.09004 * 109.46949 * 150.02764 * 5 4 3 25 25 H 1.09000 * 109.46646 * 209.99574 * 8 7 6 26 26 H 1.09000 * 109.47248 * 330.00292 * 8 7 6 27 27 H 0.96998 * 119.99944 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1948 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4165 -0.0012 6 7 4.1964 -0.0331 -0.0016 7 6 3.4955 -1.1493 -0.0015 8 6 4.2205 -2.4705 -0.0033 9 6 4.4638 -2.9119 1.4169 10 1 4.1274 -2.2969 2.2387 11 6 5.1157 -4.1007 1.6673 12 7 5.5257 -4.8492 0.6667 13 14 5.4179 -4.6475 3.4277 14 1 4.2702 -5.4654 3.8959 15 1 6.6607 -5.4581 3.4879 16 1 5.5629 -3.4536 4.2989 17 7 2.1776 -1.1408 -0.0056 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6898 2.1417 0.0007 22 1 4.5984 2.7228 -1.0290 23 1 3.8489 3.2010 0.5131 24 1 5.3503 2.2448 0.5119 25 1 3.6144 -3.2168 -0.5169 26 1 5.1750 -2.3605 -0.5181 27 1 5.9847 -5.6854 0.8428 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259076616.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:23 Heat of formation + Delta-G solvation = 4.329268 kcal Electronic energy + Delta-G solvation = -11341.265819 eV Core-core repulsion = 9290.612679 eV Total energy + Delta-G solvation = -2050.653140 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.93473 -35.86251 -35.62833 -34.18046 -30.56391 -30.17501 -28.24828 -26.05568 -22.70773 -22.49545 -18.66461 -18.56340 -16.88759 -16.43300 -16.09880 -15.64872 -14.44676 -14.27032 -14.16033 -14.13693 -13.42915 -13.38767 -13.20619 -12.92698 -12.74029 -12.62546 -12.20431 -11.63673 -11.35575 -11.18699 -10.66237 -10.06087 -10.05490 -8.27245 -6.39714 0.08509 0.28334 1.36856 1.39842 1.50843 2.36011 2.89331 3.04095 3.17574 3.32292 3.60826 4.21962 4.24993 4.49963 4.62544 4.74168 4.76225 4.84528 4.89753 5.00919 5.19134 5.19809 5.38393 5.61762 5.68995 6.02759 6.34798 6.65355 7.26832 7.41370 8.84689 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042326 B = 0.009897 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.372339 B = 2828.558629 C = 3084.728038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.150 3.850 3 C -0.242 4.242 4 C 0.150 3.850 5 C -0.096 4.096 6 N -0.558 5.558 7 C 0.338 3.662 8 C 0.090 3.910 9 C -0.527 4.527 10 H 0.042 0.958 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.975 3.025 14 H -0.268 1.268 15 H -0.271 1.271 16 H -0.270 1.270 17 N -0.558 5.558 18 H 0.098 0.902 19 H 0.069 0.931 20 H 0.112 0.888 21 H 0.189 0.811 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.069 0.931 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 14.080 -0.282 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.004 3.996 3 C -0.263 4.263 4 C 0.004 3.996 5 C -0.153 4.153 6 N -0.274 5.274 7 C 0.072 3.928 8 C 0.052 3.948 9 C -0.566 4.566 10 H 0.061 0.939 11 C -0.190 4.190 12 N -0.564 5.564 13 Si 0.798 3.202 14 H -0.193 1.193 15 H -0.196 1.196 16 H -0.195 1.195 17 N -0.274 5.274 18 H 0.117 0.883 19 H 0.088 0.912 20 H 0.131 0.869 21 H 0.206 0.794 22 H 0.117 0.883 23 H 0.131 0.869 24 H 0.088 0.912 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.193 13.076 -0.348 14.928 hybrid contribution 0.034 -0.068 0.568 0.573 sum -7.159 13.008 0.221 14.849 Atomic orbital electron populations 1.20852 0.84981 1.04822 1.04633 1.22662 0.99648 0.88179 0.89069 1.22870 0.95034 1.01309 1.07129 1.22661 0.93311 0.94522 0.89077 1.20853 0.99451 0.90352 1.04635 1.68189 1.42849 0.99278 1.17127 1.23603 0.86855 0.95037 0.87296 1.17819 0.93448 0.85816 0.97755 1.20987 1.38437 1.06043 0.91090 0.93937 1.25902 0.94612 0.95948 1.02495 1.70064 1.39438 1.13789 1.33129 0.85316 0.78254 0.78300 0.78345 1.19325 1.19597 1.19492 1.68189 1.09860 1.32251 1.17137 0.88333 0.91209 0.86946 0.79388 0.88326 0.86947 0.91221 0.96223 0.96224 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 10.22 71.24 0.73 -1.45 15 2 C 0.15 5.16 6.82 42.57 0.29 5.45 15 3 C -0.24 -7.02 9.54 22.44 0.21 -6.80 15 4 C 0.15 5.16 6.82 42.57 0.29 5.45 15 5 C -0.10 -2.18 10.22 71.24 0.73 -1.45 15 6 N -0.56 -26.09 10.27 -176.02 -1.81 -27.90 15 7 C 0.34 17.55 6.83 138.75 0.95 18.49 15 8 C 0.09 5.38 5.41 29.10 0.16 5.54 15 9 C -0.53 -32.61 9.09 25.60 0.23 -32.38 15 10 H 0.04 2.64 7.74 -2.91 -0.02 2.62 15 11 C 0.01 0.56 5.46 84.65 0.46 1.02 15 12 N -0.93 -57.46 13.29 21.45 0.28 -57.18 15 13 Si 0.97 46.13 29.54 68.60 2.03 48.16 15 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 15 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 17 N -0.56 -26.06 10.27 -176.01 -1.81 -27.87 15 18 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 19 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.11 1.67 8.10 -2.38 -0.02 1.65 15 21 H 0.19 3.28 8.06 -2.91 -0.02 3.26 15 22 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.11 1.68 8.10 -2.39 -0.02 1.66 15 24 H 0.07 1.75 8.14 -2.38 -0.02 1.73 15 25 H 0.02 1.23 8.14 -2.39 -0.02 1.21 15 26 H 0.02 1.23 8.14 -2.39 -0.02 1.21 15 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 15 Total: -1.00 -76.03 244.26 3.90 -72.14 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: 1.15 Total: -1.22 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.05 Total: -6.12 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.33 Total: -112.95 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.03 3.90 -72.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259076616.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.465 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds