Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99793 * 2 1 4 4 H 1.08993 * 109.47400 * 34.49133 * 3 2 1 5 5 C 1.50702 * 109.46955 * 154.49147 * 3 2 1 6 6 H 1.08006 * 119.99876 * 119.99935 * 5 3 2 7 7 C 1.37871 * 120.00053 * 299.99727 * 5 3 2 8 8 N 1.31512 * 119.99975 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 120.00110 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47162 * 89.99918 * 9 7 5 11 11 H 1.48498 * 109.47128 * 210.00317 * 9 7 5 12 12 H 1.48501 * 109.46883 * 330.00087 * 9 7 5 13 13 C 1.50706 * 109.46785 * 274.48955 * 3 2 1 14 14 C 1.38217 * 119.62051 * 5.71662 * 13 3 2 15 15 C 1.38633 * 119.16195 * 180.27505 * 14 13 3 16 16 C 1.38669 * 118.41814 * 359.48329 * 15 14 13 17 17 C 1.38182 * 119.16330 * 0.48034 * 16 15 14 18 18 N 1.31859 * 119.61307 * 185.69809 * 13 3 2 19 19 H 1.08996 * 109.47444 * 304.49596 * 1 2 3 20 20 H 1.09005 * 109.47105 * 64.49422 * 1 2 3 21 21 H 1.08999 * 109.47102 * 184.49342 * 1 2 3 22 22 H 1.00900 * 111.00204 * 236.04804 * 2 1 3 23 23 H 0.97001 * 119.99762 * 180.02562 * 8 7 5 24 24 H 1.08004 * 120.41822 * 0.02562 * 14 13 3 25 25 H 1.07998 * 120.79288 * 179.72862 * 15 14 13 26 26 H 1.08003 * 120.41795 * 180.21926 * 16 15 14 27 27 H 1.07999 * 119.61763 * 179.76760 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3349 2.0142 0.5819 5 6 3.3725 1.3809 0.6119 6 1 4.2184 1.7213 0.0329 7 6 3.5527 0.9550 1.9107 8 7 4.7545 0.9637 2.4448 9 14 2.0899 0.3655 2.9119 10 1 1.9152 -1.0965 2.7194 11 1 2.3270 0.6508 4.3498 12 1 0.8647 1.0739 2.4622 13 6 2.0715 1.8802 -1.4165 14 6 1.5616 1.1124 -2.4465 15 6 1.6418 1.5871 -3.7466 16 6 2.2249 2.8267 -3.9617 17 6 2.7121 3.5382 -2.8820 18 7 2.6235 3.0529 -1.6589 19 1 -0.3634 0.5820 0.8469 20 1 -0.3633 0.4425 -0.9276 21 1 -0.3633 -1.0245 0.0805 22 1 1.8306 -0.5261 -0.7814 23 1 4.8813 0.6637 3.3585 24 1 1.1100 0.1530 -2.2415 25 1 1.2558 1.0070 -4.5717 26 1 2.3010 3.2291 -4.9611 27 1 3.1710 4.5027 -3.0416 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259102915.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = 49.416025 kcal Electronic energy + Delta-G solvation = -11795.995080 eV Core-core repulsion = 9747.297049 eV Total energy + Delta-G solvation = -2048.698031 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76733 -35.95527 -32.36977 -31.87406 -30.44864 -27.79628 -24.08667 -23.20168 -22.72904 -20.32975 -17.28959 -16.43059 -15.71632 -15.01775 -14.47511 -14.21449 -13.59273 -13.12202 -12.88190 -12.61200 -12.48495 -11.66427 -11.55080 -11.03813 -10.54788 -10.40370 -9.86267 -9.36976 -9.24352 -8.76920 -8.46834 -8.40748 -7.52711 -5.93684 -4.00618 1.62447 1.77009 3.56011 3.60602 3.69356 4.36071 4.66920 4.85303 5.07358 5.14644 5.28844 5.48841 5.59693 5.66881 5.88797 5.96933 6.05662 6.21362 6.35521 6.47163 6.58300 6.69975 7.19888 7.62354 8.00821 8.13481 8.57356 8.74615 9.08988 9.68633 11.16163 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047117 B = 0.013667 C = 0.011323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.119616 B = 2048.192210 C = 2472.331915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.682 5.682 3 C 0.222 3.778 4 H 0.061 0.939 5 C -0.493 4.493 6 H 0.076 0.924 7 C 0.082 3.918 8 N -0.900 5.900 9 Si 0.929 3.071 10 H -0.278 1.278 11 H -0.316 1.316 12 H -0.276 1.276 13 C 0.152 3.848 14 C -0.198 4.198 15 C -0.077 4.077 16 C -0.204 4.204 17 C 0.099 3.901 18 N -0.463 5.463 19 H 0.061 0.939 20 H 0.015 0.985 21 H 0.056 0.944 22 H 0.335 0.665 23 H 0.263 0.737 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 0.287 -10.066 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.315 5.315 3 C 0.114 3.886 4 H 0.078 0.922 5 C -0.532 4.532 6 H 0.094 0.906 7 C -0.121 4.121 8 N -0.537 5.537 9 Si 0.761 3.239 10 H -0.204 1.204 11 H -0.245 1.245 12 H -0.201 1.201 13 C 0.013 3.987 14 C -0.218 4.218 15 C -0.103 4.103 16 C -0.224 4.224 17 C -0.060 4.060 18 N -0.172 5.172 19 H 0.080 0.920 20 H 0.033 0.967 21 H 0.075 0.925 22 H 0.155 0.845 23 H 0.072 0.928 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.787 0.646 -8.534 11.570 hybrid contribution -1.154 -0.627 -1.249 1.813 sum -8.941 0.019 -9.783 13.253 Atomic orbital electron populations 1.22412 0.90839 1.00854 0.99803 1.61192 1.04985 1.16411 1.48937 1.18861 0.98387 0.84961 0.86403 0.92168 1.20624 0.90865 1.43709 0.98028 0.90628 1.24964 0.96076 0.93565 0.97523 1.69949 1.21952 1.46955 1.14860 0.86059 0.82395 0.79720 0.75749 1.20373 1.24515 1.20137 1.22718 0.88485 0.89073 0.98427 1.22029 1.04047 1.02060 0.93674 1.21414 0.96725 0.95452 0.96678 1.21965 1.03399 0.96787 1.00210 1.22840 0.95662 0.99214 0.88237 1.67655 1.13295 1.13771 1.22467 0.92012 0.96656 0.92541 0.84483 0.92768 0.85324 0.85802 0.85780 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.55 60.06 0.57 0.76 15 2 N -0.68 -14.46 4.12 -116.50 -0.48 -14.94 15 3 C 0.22 5.31 1.83 -70.01 -0.13 5.18 15 4 H 0.06 1.52 6.78 -51.93 -0.35 1.17 15 5 C -0.49 -14.23 9.14 -34.44 -0.31 -14.54 15 6 H 0.08 2.42 7.91 -52.48 -0.42 2.01 15 7 C 0.08 2.43 5.47 -17.82 -0.10 2.33 15 8 N -0.90 -28.19 13.96 55.43 0.77 -27.41 15 9 Si 0.93 23.76 25.66 -169.99 -4.36 19.40 15 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 15 11 H -0.32 -8.17 7.11 56.52 0.40 -7.77 15 12 H -0.28 -6.71 5.41 56.52 0.31 -6.41 15 13 C 0.15 3.28 6.08 -82.59 -0.50 2.77 15 14 C -0.20 -3.48 8.17 -39.44 -0.32 -3.80 15 15 C -0.08 -1.14 10.18 -39.28 -0.40 -1.54 15 16 C -0.20 -2.98 10.11 -39.44 -0.40 -3.38 15 17 C 0.10 1.70 11.18 -17.55 -0.20 1.50 15 18 N -0.46 -10.09 9.94 -9.47 -0.09 -10.18 15 19 H 0.06 1.14 6.78 -51.93 -0.35 0.79 15 20 H 0.02 0.24 6.59 -51.93 -0.34 -0.10 15 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.33 6.54 6.76 -39.29 -0.27 6.27 15 23 H 0.26 7.74 8.31 -40.82 -0.34 7.40 15 24 H 0.13 2.03 5.12 -52.48 -0.27 1.76 15 25 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 26 H 0.12 1.38 8.06 -52.48 -0.42 0.95 15 27 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 225.54 15.07 3.40 3.40 Total: -1.00 -32.51 225.54 -5.47 -37.97 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.92 Total: 2.48 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.79 Total: -10.72 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.20 Total: -52.54 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.36 Total: 19.40 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.51 -5.47 -37.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259102915.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.388 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds