Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99793 * 2 1 4 4 H 1.08993 * 109.47400 * 34.49133 * 3 2 1 5 5 C 1.50702 * 109.46955 * 154.49147 * 3 2 1 6 6 H 1.08006 * 119.99876 * 119.99935 * 5 3 2 7 7 C 1.37871 * 120.00053 * 299.99727 * 5 3 2 8 8 N 1.31512 * 119.99975 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 120.00110 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47162 * 89.99918 * 9 7 5 11 11 H 1.48498 * 109.47128 * 210.00317 * 9 7 5 12 12 H 1.48501 * 109.46883 * 330.00087 * 9 7 5 13 13 C 1.50706 * 109.46785 * 274.48955 * 3 2 1 14 14 C 1.38217 * 119.62051 * 5.71662 * 13 3 2 15 15 C 1.38633 * 119.16195 * 180.27505 * 14 13 3 16 16 C 1.38669 * 118.41814 * 359.48329 * 15 14 13 17 17 C 1.38182 * 119.16330 * 0.48034 * 16 15 14 18 18 N 1.31859 * 119.61307 * 185.69809 * 13 3 2 19 19 H 1.08996 * 109.47444 * 304.49596 * 1 2 3 20 20 H 1.09005 * 109.47105 * 64.49422 * 1 2 3 21 21 H 1.08999 * 109.47102 * 184.49342 * 1 2 3 22 22 H 1.00900 * 111.00204 * 236.04804 * 2 1 3 23 23 H 0.97001 * 119.99762 * 180.02562 * 8 7 5 24 24 H 1.08004 * 120.41822 * 0.02562 * 14 13 3 25 25 H 1.07998 * 120.79288 * 179.72862 * 15 14 13 26 26 H 1.08003 * 120.41795 * 180.21926 * 16 15 14 27 27 H 1.07999 * 119.61763 * 179.76760 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3349 2.0142 0.5819 5 6 3.3725 1.3809 0.6119 6 1 4.2184 1.7213 0.0329 7 6 3.5527 0.9550 1.9107 8 7 4.7545 0.9637 2.4448 9 14 2.0899 0.3655 2.9119 10 1 1.9152 -1.0965 2.7194 11 1 2.3270 0.6508 4.3498 12 1 0.8647 1.0739 2.4622 13 6 2.0715 1.8802 -1.4165 14 6 1.5616 1.1124 -2.4465 15 6 1.6418 1.5871 -3.7466 16 6 2.2249 2.8267 -3.9617 17 6 2.7121 3.5382 -2.8820 18 7 2.6235 3.0529 -1.6589 19 1 -0.3634 0.5820 0.8469 20 1 -0.3633 0.4425 -0.9276 21 1 -0.3633 -1.0245 0.0805 22 1 1.8306 -0.5261 -0.7814 23 1 4.8813 0.6637 3.3585 24 1 1.1100 0.1530 -2.2415 25 1 1.2558 1.0070 -4.5717 26 1 2.3010 3.2291 -4.9611 27 1 3.1710 4.5027 -3.0416 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259102915.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = 24.701814 kcal Electronic energy + Delta-G solvation = -11797.066769 eV Core-core repulsion = 9747.297049 eV Total energy + Delta-G solvation = -2049.769720 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16307 -37.58867 -34.40429 -33.36692 -31.84642 -29.60017 -25.80456 -24.74952 -24.07992 -21.99431 -19.22363 -17.99518 -17.13717 -16.56190 -16.23061 -15.71705 -15.20487 -14.81871 -14.47547 -14.22264 -13.83564 -13.35096 -13.05884 -12.73043 -12.31883 -12.25349 -11.72834 -11.39664 -10.74213 -10.70397 -10.16397 -9.83066 -9.14396 -8.20431 -6.31236 0.28937 0.50519 1.47771 1.56627 1.65485 2.53165 2.95804 3.07989 3.57951 3.77278 3.96496 4.07835 4.32114 4.34629 4.51527 4.67829 4.79319 4.83326 4.90356 5.03074 5.20030 5.31189 5.62310 5.90317 6.22718 6.26184 6.68498 6.80112 7.33281 7.42336 8.93414 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047117 B = 0.013667 C = 0.011323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.119616 B = 2048.192210 C = 2472.331915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.694 5.694 3 C 0.232 3.768 4 H 0.042 0.958 5 C -0.494 4.494 6 H 0.024 0.976 7 C 0.023 3.977 8 N -0.952 5.952 9 Si 0.996 3.004 10 H -0.268 1.268 11 H -0.321 1.321 12 H -0.258 1.258 13 C 0.111 3.889 14 C -0.197 4.197 15 C -0.070 4.070 16 C -0.183 4.183 17 C 0.078 3.922 18 N -0.517 5.517 19 H 0.050 0.950 20 H 0.036 0.964 21 H 0.085 0.915 22 H 0.344 0.656 23 H 0.264 0.736 24 H 0.147 0.853 25 H 0.171 0.829 26 H 0.170 0.830 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 -0.544 -12.447 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.328 5.328 3 C 0.123 3.877 4 H 0.059 0.941 5 C -0.533 4.533 6 H 0.043 0.957 7 C -0.175 4.175 8 N -0.593 5.593 9 Si 0.825 3.175 10 H -0.193 1.193 11 H -0.251 1.251 12 H -0.183 1.183 13 C -0.028 4.028 14 C -0.217 4.217 15 C -0.096 4.096 16 C -0.202 4.202 17 C -0.079 4.079 18 N -0.227 5.227 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.104 0.896 22 H 0.166 0.834 23 H 0.072 0.928 24 H 0.164 0.836 25 H 0.188 0.812 26 H 0.188 0.812 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.234 -0.187 -10.944 14.985 hybrid contribution -0.355 -0.281 -0.706 0.839 sum -10.590 -0.468 -11.650 15.751 Atomic orbital electron populations 1.22462 0.87982 1.02739 1.00417 1.60789 1.07616 1.14597 1.49824 1.18365 0.94944 0.86274 0.88130 0.94063 1.20824 0.92262 1.42358 0.97847 0.95731 1.25872 0.98749 0.94029 0.98847 1.70097 1.24403 1.49378 1.15406 0.84990 0.79390 0.79606 0.73533 1.19339 1.25145 1.18291 1.22371 0.91827 0.90487 0.98075 1.22169 1.03391 1.02116 0.93982 1.21962 0.95356 0.95646 0.96630 1.22455 1.00398 0.96070 1.01308 1.23334 0.96279 1.00563 0.87760 1.67471 1.14840 1.14872 1.25498 0.93150 0.94567 0.89589 0.83433 0.92754 0.83586 0.81188 0.81240 0.81336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.42 9.55 127.69 1.22 1.63 15 2 N -0.69 -28.39 4.12 -522.48 -2.15 -30.54 15 3 C 0.23 11.22 1.83 43.43 0.08 11.30 15 4 H 0.04 2.12 6.78 -2.39 -0.02 2.10 15 5 C -0.49 -29.77 9.14 25.60 0.23 -29.54 15 6 H 0.02 1.68 7.91 -2.91 -0.02 1.65 15 7 C 0.02 1.40 5.47 84.65 0.46 1.86 15 8 N -0.95 -62.40 13.96 21.44 0.30 -62.10 15 9 Si 1.00 49.87 25.66 68.60 1.76 51.63 15 10 H -0.27 -12.90 7.11 99.48 0.71 -12.19 15 11 H -0.32 -16.24 7.11 99.48 0.71 -15.53 15 12 H -0.26 -12.03 5.41 99.48 0.54 -11.50 15 13 C 0.11 4.76 6.08 42.55 0.26 5.02 15 14 C -0.20 -6.39 8.17 22.36 0.18 -6.21 15 15 C -0.07 -1.76 10.18 22.47 0.23 -1.54 15 16 C -0.18 -4.58 10.11 22.36 0.23 -4.35 15 17 C 0.08 2.57 11.18 84.67 0.95 3.52 15 18 N -0.52 -22.83 9.94 -183.89 -1.83 -24.66 15 19 H 0.05 1.72 6.78 -2.39 -0.02 1.70 15 20 H 0.04 1.01 6.59 -2.38 -0.02 0.99 15 21 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.34 12.84 6.76 -89.69 -0.61 12.23 15 23 H 0.26 16.20 8.31 -92.71 -0.77 15.43 15 24 H 0.15 4.08 5.12 -2.91 -0.01 4.07 15 25 H 0.17 2.73 8.06 -2.91 -0.02 2.71 15 26 H 0.17 2.71 8.06 -2.91 -0.02 2.68 15 27 H 0.17 4.49 8.06 -2.91 -0.02 4.47 15 Total: -1.00 -75.22 225.54 2.32 -72.91 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.40 Total: 11.06 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 3.84 Total: -18.30 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -3.68 Total: -117.30 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 1.76 Total: 51.63 kcal Total: -75.22 2.32 -72.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259102915.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.609 kcal (2) G-P(sol) polarization free energy of solvation -75.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds