Wall clock time and date at job start Mon Mar 30 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47044 * 2 1 4 4 C 1.50699 * 109.47076 * 180.02562 * 3 2 1 5 5 C 1.39094 * 120.37390 * 125.00309 * 4 3 2 6 6 C 1.39053 * 118.67725 * 179.72484 * 5 4 3 7 7 N 1.31910 * 119.25958 * 0.27168 * 6 5 4 8 8 C 1.33441 * 120.68729 * 0.02562 * 7 6 5 9 9 C 1.41594 * 119.28141 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99782 * 173.65593 * 9 8 7 11 11 C 1.40067 * 120.00046 * 353.65511 * 9 8 7 12 12 N 1.30689 * 120.00262 * 6.31122 * 11 9 8 13 13 Si 1.86801 * 119.99790 * 186.31408 * 11 9 8 14 14 H 1.48502 * 109.46912 * 94.98732 * 13 11 9 15 15 H 1.48501 * 109.47128 * 214.98482 * 13 11 9 16 16 H 1.48496 * 109.47349 * 334.98597 * 13 11 9 17 17 N 1.31888 * 120.37083 * 305.26371 * 4 3 2 18 18 H 1.09001 * 109.46663 * 299.99991 * 1 2 3 19 19 H 1.09002 * 109.46906 * 59.99837 * 1 2 3 20 20 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47054 * 240.00255 * 2 1 3 22 22 H 1.09000 * 109.47423 * 120.00148 * 2 1 3 23 23 H 1.09006 * 109.46987 * 60.00214 * 3 2 1 24 24 H 1.09002 * 109.47402 * 299.99859 * 3 2 1 25 25 H 1.08009 * 120.66124 * 359.97438 * 5 4 3 26 26 H 1.08005 * 120.37150 * 180.25481 * 6 5 4 27 27 H 0.96991 * 120.00080 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2499 2.1310 -0.9838 6 6 5.6398 2.1122 -0.9473 7 7 6.2506 1.4412 0.0102 8 6 5.5488 0.7851 0.9363 9 6 6.2351 0.0749 1.9510 10 1 5.6832 -0.3739 2.7635 11 6 7.6297 -0.0455 1.9008 12 7 8.3089 0.5990 0.9891 13 14 8.5187 -1.1274 3.1372 14 1 8.7357 -2.4742 2.5503 15 1 9.8299 -0.5178 3.4757 16 1 7.6974 -1.2503 4.3682 17 7 4.2142 0.7854 0.9281 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5138 0.8900 23 1 1.6767 1.9563 0.8901 24 1 1.6767 1.9564 -0.8900 25 1 3.7265 2.6729 -1.7578 26 1 6.2129 2.6409 -1.6947 27 1 9.2746 0.5159 0.9547 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259161138.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:38 Heat of formation + Delta-G solvation = 4.625207 kcal Electronic energy + Delta-G solvation = -11412.436694 eV Core-core repulsion = 9361.796387 eV Total energy + Delta-G solvation = -2050.640307 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85745 -36.53038 -35.33781 -33.35315 -32.23720 -28.51709 -27.81384 -23.97056 -23.43393 -21.92189 -19.33181 -17.95753 -16.86002 -16.17117 -15.80760 -15.52479 -14.98360 -14.61602 -14.13690 -13.88254 -13.25560 -12.96926 -12.83139 -12.63777 -12.23177 -12.04909 -11.91174 -11.58170 -11.24676 -10.88448 -10.84844 -9.81475 -9.24080 -8.43485 -6.73982 0.74640 1.03905 1.39201 1.50810 1.55726 2.20341 2.75106 3.76948 3.88818 4.00976 4.16413 4.26711 4.42227 4.60600 4.77326 4.85122 4.88119 5.04662 5.06269 5.16660 5.27176 5.34303 5.49981 5.53654 5.85295 6.16867 6.56468 6.65624 7.22916 8.24396 8.38845 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048380 B = 0.010226 C = 0.008636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.607250 B = 2737.328163 C = 3241.515102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.055 4.055 4 C 0.169 3.831 5 C -0.367 4.367 6 C 0.134 3.866 7 N -0.549 5.549 8 C 0.361 3.639 9 C -0.444 4.444 10 H 0.087 0.913 11 C 0.024 3.976 12 N -0.751 5.751 13 Si 1.000 3.000 14 H -0.261 1.261 15 H -0.261 1.261 16 H -0.256 1.256 17 N -0.614 5.614 18 H 0.060 0.940 19 H 0.068 0.932 20 H 0.060 0.940 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.142 0.858 26 H 0.155 0.845 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 -0.370 -1.496 6.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.093 4.093 4 C 0.017 3.983 5 C -0.393 4.393 6 C -0.038 4.038 7 N -0.267 5.267 8 C 0.123 3.877 9 C -0.479 4.479 10 H 0.105 0.895 11 C -0.199 4.199 12 N -0.373 5.373 13 Si 0.819 3.181 14 H -0.186 1.186 15 H -0.185 1.185 16 H -0.179 1.179 17 N -0.335 5.335 18 H 0.079 0.921 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.159 0.841 26 H 0.173 0.827 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.063 -0.838 -0.831 6.177 hybrid contribution 0.221 0.245 -0.418 0.533 sum -5.842 -0.593 -1.249 6.004 Atomic orbital electron populations 1.21719 0.93138 1.02296 1.02581 1.21328 0.97213 0.95283 1.00981 1.20543 0.86932 0.98532 1.03326 1.22001 0.97753 0.89270 0.89250 1.22283 0.96078 1.14327 1.06655 1.23470 0.92785 0.92766 0.94789 1.69321 1.39353 1.12544 1.05525 1.20422 0.85316 0.90185 0.91809 1.19658 0.92478 1.28950 1.06812 0.89535 1.27076 0.97861 0.96627 0.98310 1.70207 1.08606 1.30123 1.28374 0.84939 0.77549 0.77803 0.77793 1.18573 1.18492 1.17943 1.68515 1.09811 1.26400 1.28767 0.92140 0.91328 0.92049 0.93593 0.93634 0.90411 0.88521 0.84058 0.82747 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.91 71.98 0.71 -2.49 15 2 C -0.11 -3.53 5.80 30.59 0.18 -3.36 15 3 C -0.06 -1.90 5.65 29.85 0.17 -1.73 15 4 C 0.17 7.84 6.22 42.76 0.27 8.11 15 5 C -0.37 -16.30 9.83 22.67 0.22 -16.08 15 6 C 0.13 6.61 11.30 84.88 0.96 7.57 15 7 N -0.55 -32.12 7.91 -193.91 -1.53 -33.65 15 8 C 0.36 21.69 7.36 135.15 0.99 22.69 15 9 C -0.44 -25.81 9.37 23.54 0.22 -25.59 15 10 H 0.09 4.88 7.85 -2.91 -0.02 4.86 15 11 C 0.02 1.28 5.49 85.31 0.47 1.74 15 12 N -0.75 -41.21 11.46 21.84 0.25 -40.96 15 13 Si 1.00 38.99 29.56 68.60 2.03 41.02 15 14 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 15 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 16 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 17 N -0.61 -33.88 9.94 -182.00 -1.81 -35.68 15 18 H 0.06 1.29 8.14 -2.39 -0.02 1.28 15 19 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.05 1.53 8.14 -2.38 -0.02 1.51 15 22 H 0.04 1.71 7.97 -2.39 -0.02 1.69 15 23 H 0.08 2.55 8.14 -2.38 -0.02 2.53 15 24 H 0.10 2.69 7.94 -2.39 -0.02 2.67 15 25 H 0.14 5.05 8.01 -2.91 -0.02 5.03 15 26 H 0.16 6.47 8.06 -2.91 -0.02 6.45 15 27 H 0.28 13.84 8.29 -92.71 -0.77 13.07 15 Total: -1.00 -67.86 239.94 4.27 -63.59 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.15 Total: 14.83 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 4.19 Total: -9.14 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -3.09 Total: -110.30 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -67.86 4.27 -63.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259161138.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.211 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds