Wall clock time and date at job start Mon Mar 30 2020 02:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47248 * 2 1 4 4 C 1.38619 * 120.45091 * 125.00038 * 3 2 1 5 5 C 1.38574 * 118.40081 * 180.30259 * 4 3 2 6 6 N 1.32353 * 119.10120 * 359.44005 * 5 4 3 7 7 C 1.31778 * 120.82199 * 0.57366 * 6 5 4 8 8 C 1.50697 * 119.12290 * 179.72937 * 7 6 5 9 9 C 1.50704 * 109.47114 * 269.97761 * 8 7 6 10 10 H 1.08001 * 119.99303 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99796 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00133 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46553 * 90.00490 * 13 11 9 15 15 H 1.48503 * 109.47083 * 209.99677 * 13 11 9 16 16 H 1.48494 * 109.47135 * 330.00492 * 13 11 9 17 17 N 1.31807 * 121.75360 * 359.69978 * 7 6 5 18 18 H 1.08999 * 109.47060 * 300.00115 * 1 2 3 19 19 H 1.08996 * 109.47012 * 60.00136 * 1 2 3 20 20 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47452 * 240.00136 * 2 1 3 22 22 H 1.08995 * 109.47461 * 120.00151 * 2 1 3 23 23 H 1.08002 * 120.79619 * 0.02562 * 4 3 2 24 24 H 1.07999 * 120.44881 * 179.72646 * 5 4 3 25 25 H 1.09001 * 109.47272 * 29.97447 * 8 7 6 26 26 H 1.08994 * 109.47339 * 149.97837 * 8 7 6 27 27 H 0.97001 * 120.00207 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8547 0.9789 5 6 3.3426 3.1715 0.9420 6 7 2.9100 3.9630 -0.0267 7 6 2.0729 3.5157 -0.9409 8 6 1.6002 4.4517 -2.0231 9 6 0.3449 5.1514 -1.5692 10 1 -0.0692 4.9390 -0.5946 11 6 -0.2753 6.0617 -2.3983 12 7 0.2282 6.3191 -3.5857 13 14 -1.8316 6.9283 -1.8359 14 1 -1.4713 8.1871 -1.1350 15 1 -2.6768 7.2431 -3.0156 16 1 -2.5835 6.0439 -0.9099 17 7 1.6386 2.2713 -0.9342 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8899 23 1 3.2519 1.1837 1.7542 24 1 4.0250 3.5457 1.6908 25 1 2.3744 5.1912 -2.2278 26 1 1.3918 3.8834 -2.9296 27 1 -0.2083 6.9593 -4.1693 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259183735.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:58 Heat of formation + Delta-G solvation = 27.363564 kcal Electronic energy + Delta-G solvation = -11362.315570 eV Core-core repulsion = 9312.661272 eV Total energy + Delta-G solvation = -2049.654298 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.37532 -34.83500 -33.44657 -32.08798 -30.64430 -28.12599 -24.72236 -24.02906 -21.94212 -20.71921 -16.92283 -16.40224 -15.77499 -14.85156 -14.52423 -14.17603 -13.84616 -13.41090 -12.50412 -12.21603 -11.88224 -11.45119 -11.27532 -11.02620 -10.86111 -10.64421 -10.32475 -9.92053 -9.65978 -9.53744 -8.58817 -8.48246 -8.40654 -6.04549 -4.06773 1.59484 1.72586 3.33030 3.38192 3.42763 4.35314 4.55525 4.58409 4.84627 4.89979 5.31912 5.36166 5.41415 5.52006 5.52947 5.79973 5.94178 6.13164 6.26806 6.34293 6.50706 7.10788 7.50268 7.52591 7.77717 7.89664 8.24442 8.92809 8.99212 9.54791 11.06609 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.010157 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.437369 B = 2756.123508 C = 3061.121902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C 0.169 3.831 4 C -0.265 4.265 5 C 0.143 3.857 6 N -0.524 5.524 7 C 0.363 3.637 8 C 0.079 3.921 9 C -0.504 4.504 10 H 0.053 0.947 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.901 3.099 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.515 5.515 18 H 0.051 0.949 19 H 0.072 0.928 20 H 0.055 0.945 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.133 0.867 24 H 0.157 0.843 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -10.136 7.726 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C 0.021 3.979 4 C -0.287 4.287 5 C -0.024 4.024 6 N -0.238 5.238 7 C 0.099 3.901 8 C 0.040 3.960 9 C -0.543 4.543 10 H 0.071 0.929 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.728 3.272 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.230 5.230 18 H 0.070 0.930 19 H 0.091 0.909 20 H 0.074 0.926 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.151 0.849 24 H 0.174 0.826 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.885 -9.406 6.832 11.978 hybrid contribution -0.449 -0.064 1.117 1.205 sum 2.436 -9.470 7.949 12.602 Atomic orbital electron populations 1.21663 0.93887 1.01330 1.03299 1.20463 0.97269 0.90350 1.02714 1.21723 0.90514 0.96200 0.89471 1.22503 1.04305 0.98955 1.02965 1.23166 0.94680 0.89892 0.94677 1.68455 1.13322 1.38059 1.03957 1.24447 0.84479 0.88508 0.92660 1.18245 0.96876 0.91424 0.89443 1.20775 1.08320 1.23201 1.02010 0.92872 1.24928 0.97756 0.96578 0.94813 1.69947 1.40168 1.34614 1.08402 0.86453 0.82728 0.79840 0.78177 1.20503 1.21005 1.19923 1.68254 1.25002 1.04549 1.25154 0.93020 0.90920 0.92562 0.89940 0.90652 0.84897 0.82626 0.93408 0.93412 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.78 37.16 0.36 -1.57 15 2 C -0.07 -0.92 6.37 -27.88 -0.18 -1.10 15 3 C 0.17 2.97 6.21 -82.24 -0.51 2.46 15 4 C -0.26 -4.12 9.80 -39.32 -0.39 -4.51 15 5 C 0.14 2.47 11.30 -17.20 -0.19 2.27 15 6 N -0.52 -11.70 10.33 -10.73 -0.11 -11.81 15 7 C 0.36 8.81 6.83 -157.20 -1.07 7.74 15 8 C 0.08 2.16 5.41 -29.03 -0.16 2.00 15 9 C -0.50 -14.75 9.09 -34.44 -0.31 -15.06 15 10 H 0.05 1.57 7.74 -52.49 -0.41 1.16 15 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 12 N -0.89 -26.71 13.29 55.43 0.74 -25.98 15 13 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 15 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 16 H -0.27 -6.66 7.11 56.52 0.40 -6.25 15 17 N -0.51 -11.40 9.94 -6.99 -0.07 -11.47 15 18 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.07 1.16 7.98 -51.93 -0.41 0.74 15 20 H 0.06 0.60 8.14 -51.93 -0.42 0.17 15 21 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 22 H 0.07 0.77 7.94 -51.93 -0.41 0.36 15 23 H 0.13 1.52 8.01 -52.49 -0.42 1.10 15 24 H 0.16 2.03 8.06 -52.49 -0.42 1.61 15 25 H 0.05 1.37 8.14 -51.93 -0.42 0.94 15 26 H 0.05 1.36 8.14 -51.93 -0.42 0.94 15 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -32.00 243.42 -6.67 -38.66 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: -3.32 Total: -4.02 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.55 Total: -6.10 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.56 Total: -49.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.00 -6.67 -38.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259183735.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.027 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds