Wall clock time and date at job start Mon Mar 30 2020 02:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47248 * 2 1 4 4 C 1.38619 * 120.45091 * 125.00038 * 3 2 1 5 5 C 1.38574 * 118.40081 * 180.30259 * 4 3 2 6 6 N 1.32353 * 119.10120 * 359.44005 * 5 4 3 7 7 C 1.31778 * 120.82199 * 0.57366 * 6 5 4 8 8 C 1.50697 * 119.12290 * 179.72937 * 7 6 5 9 9 C 1.50704 * 109.47114 * 269.97761 * 8 7 6 10 10 H 1.08001 * 119.99303 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99796 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00133 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46553 * 90.00490 * 13 11 9 15 15 H 1.48503 * 109.47083 * 209.99677 * 13 11 9 16 16 H 1.48494 * 109.47135 * 330.00492 * 13 11 9 17 17 N 1.31807 * 121.75360 * 359.69978 * 7 6 5 18 18 H 1.08999 * 109.47060 * 300.00115 * 1 2 3 19 19 H 1.08996 * 109.47012 * 60.00136 * 1 2 3 20 20 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47452 * 240.00136 * 2 1 3 22 22 H 1.08995 * 109.47461 * 120.00151 * 2 1 3 23 23 H 1.08002 * 120.79619 * 0.02562 * 4 3 2 24 24 H 1.07999 * 120.44881 * 179.72646 * 5 4 3 25 25 H 1.09001 * 109.47272 * 29.97447 * 8 7 6 26 26 H 1.08994 * 109.47339 * 149.97837 * 8 7 6 27 27 H 0.97001 * 120.00207 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8547 0.9789 5 6 3.3426 3.1715 0.9420 6 7 2.9100 3.9630 -0.0267 7 6 2.0729 3.5157 -0.9409 8 6 1.6002 4.4517 -2.0231 9 6 0.3449 5.1514 -1.5692 10 1 -0.0692 4.9390 -0.5946 11 6 -0.2753 6.0617 -2.3983 12 7 0.2282 6.3191 -3.5857 13 14 -1.8316 6.9283 -1.8359 14 1 -1.4713 8.1871 -1.1350 15 1 -2.6768 7.2431 -3.0156 16 1 -2.5835 6.0439 -0.9099 17 7 1.6386 2.2713 -0.9342 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8899 23 1 3.2519 1.1837 1.7542 24 1 4.0250 3.5457 1.6908 25 1 2.3744 5.1912 -2.2278 26 1 1.3918 3.8834 -2.9296 27 1 -0.2083 6.9593 -4.1693 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259183735.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:57 Heat of formation + Delta-G solvation = 5.960646 kcal Electronic energy + Delta-G solvation = -11363.243670 eV Core-core repulsion = 9312.661272 eV Total energy + Delta-G solvation = -2050.582398 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.87975 -36.24669 -35.39143 -33.80591 -32.06936 -30.02947 -26.11120 -25.91924 -23.45292 -22.21019 -18.66284 -18.42139 -17.22258 -16.53028 -16.05857 -15.70016 -15.05223 -14.73635 -14.39162 -13.97241 -13.51335 -13.20796 -12.82554 -12.64779 -12.41637 -12.19906 -12.09654 -11.70112 -11.36123 -11.33707 -10.65515 -10.13194 -9.99858 -8.26486 -6.38616 0.11003 0.32508 1.37193 1.39922 1.50842 2.36507 2.95067 3.05126 3.19273 3.41831 3.65811 4.17355 4.29248 4.38111 4.44405 4.63270 4.75953 4.91411 5.01295 5.13469 5.19650 5.35389 5.44342 5.62003 5.64961 6.03643 6.33522 6.66696 7.27878 7.41669 8.85385 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.010157 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.437369 B = 2756.123508 C = 3061.121902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C 0.150 3.850 4 C -0.236 4.236 5 C 0.132 3.868 6 N -0.557 5.557 7 C 0.333 3.667 8 C 0.089 3.911 9 C -0.525 4.525 10 H 0.043 0.957 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.973 3.027 14 H -0.268 1.268 15 H -0.272 1.272 16 H -0.270 1.270 17 N -0.545 5.545 18 H 0.045 0.955 19 H 0.035 0.965 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.120 0.880 23 H 0.190 0.810 24 H 0.202 0.798 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -11.653 10.173 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C 0.004 3.996 4 C -0.257 4.257 5 C -0.033 4.033 6 N -0.272 5.272 7 C 0.067 3.933 8 C 0.050 3.950 9 C -0.564 4.564 10 H 0.061 0.939 11 C -0.190 4.190 12 N -0.564 5.564 13 Si 0.796 3.204 14 H -0.194 1.194 15 H -0.197 1.197 16 H -0.195 1.195 17 N -0.260 5.260 18 H 0.064 0.936 19 H 0.054 0.946 20 H 0.107 0.893 21 H 0.108 0.892 22 H 0.139 0.861 23 H 0.208 0.792 24 H 0.218 0.782 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.887 -10.946 9.296 14.648 hybrid contribution -0.355 0.285 0.433 0.629 sum 2.532 -10.660 9.729 14.653 Atomic orbital electron populations 1.21643 0.94426 1.02777 1.01176 1.20657 0.96708 0.87760 1.05241 1.22609 0.90702 0.97460 0.88854 1.23087 1.01395 0.98772 1.02490 1.23977 0.94760 0.90556 0.93975 1.68305 1.13758 1.39983 1.05160 1.23577 0.87088 0.89209 0.93427 1.17818 0.95762 0.91270 0.90107 1.20993 1.09437 1.24168 1.01818 0.93882 1.25886 1.01266 0.97068 0.94737 1.70062 1.41758 1.35139 1.09484 0.85341 0.78255 0.78649 0.78126 1.19360 1.19683 1.19490 1.68123 1.26058 1.04331 1.27501 0.93585 0.94613 0.89297 0.89191 0.86149 0.79235 0.78176 0.96213 0.96271 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.78 71.98 0.70 -2.84 15 2 C -0.07 -1.52 6.37 29.85 0.19 -1.33 15 3 C 0.15 4.97 6.21 42.58 0.26 5.24 15 4 C -0.24 -6.38 9.80 22.44 0.22 -6.16 15 5 C 0.13 4.22 11.30 84.69 0.96 5.18 15 6 N -0.56 -25.11 10.33 -187.86 -1.94 -27.05 15 7 C 0.33 16.80 6.83 138.75 0.95 17.75 15 8 C 0.09 5.24 5.41 29.10 0.16 5.39 15 9 C -0.53 -32.17 9.09 25.60 0.23 -31.94 15 10 H 0.04 2.65 7.74 -2.91 -0.02 2.62 15 11 C 0.01 0.55 5.46 84.65 0.46 1.01 15 12 N -0.93 -57.21 13.29 21.45 0.28 -56.93 15 13 Si 0.97 45.92 29.54 68.60 2.03 47.94 15 14 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 17 N -0.54 -24.60 9.94 -176.01 -1.75 -26.34 15 18 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 19 H 0.03 1.14 7.98 -2.39 -0.02 1.12 15 20 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.12 1.72 7.94 -2.39 -0.02 1.70 15 23 H 0.19 2.95 8.01 -2.91 -0.02 2.93 15 24 H 0.20 4.38 8.06 -2.91 -0.02 4.36 15 25 H 0.02 1.22 8.14 -2.39 -0.02 1.20 15 26 H 0.02 1.19 8.14 -2.39 -0.02 1.17 15 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 Total: -1.00 -74.24 243.42 3.90 -70.33 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: 1.15 Total: -0.27 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.14 Total: -7.69 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -3.41 Total: -110.32 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -74.24 3.90 -70.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259183735.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.295 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds