Wall clock time and date at job start Mon Mar 30 2020 02:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34885 * 126.02852 * 2 1 4 4 C 1.35360 * 107.83362 * 179.91752 * 3 2 1 5 5 C 1.40021 * 107.87350 * 0.12260 * 4 3 2 6 6 N 1.31045 * 108.10942 * 359.87721 * 5 4 3 7 7 C 1.51323 * 109.53354 * 179.97438 * 5 4 3 8 8 C 1.54334 * 105.22495 * 342.70158 * 7 5 4 9 9 C 1.51283 * 142.65990 * 179.83504 * 4 3 2 10 10 H 1.09000 * 110.29446 * 78.41444 * 9 4 3 11 11 C 1.50702 * 110.29585 * 316.38384 * 9 4 3 12 12 H 1.08002 * 119.99738 * 277.06825 * 11 9 4 13 13 C 1.37869 * 119.99938 * 97.06126 * 11 9 4 14 14 N 1.31519 * 119.99770 * 184.90726 * 13 11 9 15 15 Si 1.86803 * 120.00301 * 4.90860 * 13 11 9 16 16 H 1.48496 * 109.47303 * 84.83110 * 15 13 11 17 17 H 1.48499 * 109.46885 * 324.82931 * 15 13 11 18 18 H 1.48501 * 109.46862 * 204.82961 * 15 13 11 19 19 H 1.09004 * 109.46841 * 270.02882 * 1 2 3 20 20 H 1.09005 * 109.46989 * 30.02679 * 1 2 3 21 21 H 1.08997 * 109.46781 * 150.02515 * 1 2 3 22 22 H 1.08000 * 126.11827 * 0.03419 * 3 2 1 23 23 H 1.08998 * 110.29769 * 223.75714 * 7 5 4 24 24 H 1.09008 * 110.36723 * 101.67619 * 7 5 4 25 25 H 1.09000 * 110.76786 * 268.23575 * 8 7 5 26 26 H 1.08998 * 110.77439 * 144.83169 * 8 7 5 27 27 H 0.97005 * 120.00066 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2584 1.0908 0.0000 4 6 3.5443 0.6682 0.0019 5 6 3.5365 -0.7320 0.0002 6 7 2.2887 -1.1323 0.0001 7 6 4.9598 -1.2459 0.0015 8 6 5.8245 -0.0458 -0.4386 9 6 4.9735 1.1643 0.0005 10 1 5.2630 1.4859 1.0009 11 6 5.1320 2.2990 -0.9786 12 1 5.2875 2.0900 -2.0267 13 6 5.0783 3.6037 -0.5363 14 7 5.1197 4.5935 -1.4014 15 14 4.9469 3.9657 1.2916 16 1 6.3034 3.9629 1.8956 17 1 4.1125 2.9245 1.9436 18 1 4.3201 5.2974 1.4886 19 1 -0.3633 0.0005 1.0277 20 1 -0.3633 0.8898 -0.5143 21 1 -0.3633 -0.8902 -0.5134 22 1 1.9273 2.1188 0.0005 23 1 5.0656 -2.0680 -0.7063 24 1 5.2450 -1.5705 1.0023 25 1 5.9653 -0.0467 -1.5195 26 1 6.7846 -0.0512 0.0773 27 1 5.0823 5.5115 -1.0902 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259461247.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:45 Heat of formation + Delta-G solvation = 59.880095 kcal Electronic energy + Delta-G solvation = -11805.620291 eV Core-core repulsion = 9757.376016 eV Total energy + Delta-G solvation = -2048.244275 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -42.22377 -37.55812 -34.59352 -32.86665 -31.18841 -29.16351 -26.88430 -25.14845 -22.47784 -20.57172 -20.29516 -19.03293 -17.27777 -16.49302 -16.13908 -15.46478 -15.11475 -14.66757 -14.29156 -13.81956 -13.41058 -13.20308 -12.88890 -12.83854 -12.41390 -12.12827 -11.69988 -11.47645 -11.31953 -11.06166 -10.63899 -10.01702 -8.94810 -8.22972 -6.24736 1.02115 1.37834 1.40246 1.52722 1.72807 1.99342 2.40363 3.14052 3.30172 4.05833 4.20437 4.33915 4.41111 4.45754 4.65253 4.71968 4.82346 4.94454 5.01915 5.22879 5.45682 5.53888 5.59755 5.71551 5.89954 6.31148 6.39036 6.80728 6.89855 7.39741 8.94180 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.035842 B = 0.015112 C = 0.012336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.021265 B = 1852.346986 C = 2269.254044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.386 5.386 3 C 0.045 3.955 4 C -0.247 4.247 5 C 0.023 3.977 6 N -0.314 5.314 7 C -0.021 4.021 8 C -0.102 4.102 9 C 0.073 3.927 10 H 0.041 0.959 11 C -0.500 4.500 12 H 0.028 0.972 13 C 0.015 3.985 14 N -0.952 5.952 15 Si 0.940 3.060 16 H -0.263 1.263 17 H -0.251 1.251 18 H -0.290 1.290 19 H 0.087 0.913 20 H 0.103 0.897 21 H 0.095 0.905 22 H 0.172 0.828 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 -8.472 6.144 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.170 5.170 3 C -0.099 4.099 4 C -0.259 4.259 5 C -0.143 4.143 6 N -0.137 5.137 7 C -0.060 4.060 8 C -0.140 4.140 9 C 0.054 3.946 10 H 0.059 0.941 11 C -0.538 4.538 12 H 0.046 0.954 13 C -0.182 4.182 14 N -0.593 5.593 15 Si 0.765 3.235 16 H -0.188 1.188 17 H -0.175 1.175 18 H -0.216 1.216 19 H 0.105 0.895 20 H 0.122 0.878 21 H 0.114 0.886 22 H 0.189 0.811 23 H 0.108 0.892 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.880 -9.276 6.123 13.071 hybrid contribution 0.241 1.585 0.232 1.620 sum -6.639 -7.690 6.354 11.983 Atomic orbital electron populations 1.22107 0.71925 1.05561 1.04426 1.48841 1.07533 1.02218 1.58420 1.21689 0.91017 0.93425 1.03757 1.21855 0.96862 0.95121 1.12036 1.23854 0.94815 0.95818 0.99847 1.76744 1.00941 1.08487 1.27535 1.20603 0.83698 0.98207 1.03464 1.22344 0.98323 0.92532 1.00827 1.18215 0.86791 0.94098 0.95532 0.94067 1.21226 1.47740 0.90679 0.94137 0.95367 1.25878 0.94323 0.95916 1.02043 1.70074 1.53117 0.99723 1.36389 0.85821 0.79655 0.77278 0.80768 1.18840 1.17521 1.21591 0.89489 0.87829 0.88626 0.81097 0.89215 0.87875 0.92660 0.88901 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.29 11.47 127.77 1.47 3.76 15 2 N -0.39 -14.06 4.01 -369.56 -1.48 -15.54 15 3 C 0.05 1.89 11.49 83.56 0.96 2.85 15 4 C -0.25 -11.27 6.17 -19.91 -0.12 -11.39 15 5 C 0.02 0.94 8.10 43.31 0.35 1.29 15 6 N -0.31 -12.65 12.58 -46.70 -0.59 -13.23 15 7 C -0.02 -0.68 6.76 30.50 0.21 -0.48 15 8 C -0.10 -3.90 6.55 31.49 0.21 -3.70 15 9 C 0.07 3.46 2.45 -11.65 -0.03 3.43 15 10 H 0.04 1.92 5.36 -2.39 -0.01 1.90 15 11 C -0.50 -28.49 8.87 25.60 0.23 -28.26 15 12 H 0.03 1.80 7.95 -2.91 -0.02 1.78 15 13 C 0.01 0.86 5.47 84.65 0.46 1.32 15 14 N -0.95 -59.11 13.96 21.44 0.30 -58.81 15 15 Si 0.94 43.89 27.00 68.60 1.85 45.74 15 16 H -0.26 -11.73 7.11 99.48 0.71 -11.02 15 17 H -0.25 -11.19 6.82 99.48 0.68 -10.51 15 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 15 19 H 0.09 1.65 8.14 -2.38 -0.02 1.63 15 20 H 0.10 1.94 8.14 -2.38 -0.02 1.92 15 21 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.17 6.69 8.06 -2.91 -0.02 6.66 15 23 H 0.09 2.57 8.14 -2.39 -0.02 2.56 15 24 H 0.10 2.86 8.14 -2.38 -0.02 2.84 15 25 H 0.05 2.24 7.83 -2.39 -0.02 2.22 15 26 H 0.09 3.01 8.14 -2.39 -0.02 2.99 15 27 H 0.26 15.35 8.31 -92.70 -0.77 14.58 15 Total: -1.00 -71.13 232.28 4.94 -66.19 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.13 Total: 6.84 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.73 Total: -31.18 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.77 Total: -87.59 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.85 Total: 45.74 kcal Total: -71.13 4.94 -66.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259461247.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.072 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds