Wall clock time and date at job start Mon Mar 30 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47402 * 269.99777 * 3 2 1 5 5 H 1.48496 * 109.47346 * 30.00092 * 3 2 1 6 6 H 1.48501 * 109.46922 * 149.99973 * 3 2 1 7 7 C 1.37881 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00036 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47209 * 179.97438 * 9 7 2 11 11 C 1.35044 * 126.39523 * 270.00124 * 10 9 7 12 12 N 1.30501 * 108.69892 * 179.97438 * 11 10 9 13 13 C 1.34134 * 109.25535 * 359.97438 * 12 11 10 14 14 C 1.50698 * 125.98625 * 179.97438 * 13 12 11 15 15 C 1.53004 * 117.49555 * 163.64921 * 14 13 12 16 16 C 1.53001 * 60.00054 * 252.50735 * 15 14 13 17 17 C 1.34668 * 108.01972 * 0.02562 * 13 12 11 18 18 H 0.96996 * 120.00021 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47211 * 60.00113 * 9 7 2 20 20 H 1.09004 * 109.47037 * 299.99686 * 9 7 2 21 21 H 1.07996 * 125.65229 * 359.97438 * 11 10 9 22 22 H 1.09002 * 115.55466 * 309.35487 * 14 13 12 23 23 H 1.08999 * 117.50100 * 0.02562 * 15 14 13 24 24 H 1.09004 * 117.50016 * 145.02319 * 15 14 13 25 25 H 1.08998 * 117.50246 * 252.50780 * 16 15 14 26 26 H 1.09008 * 117.51350 * 107.47919 * 16 15 14 27 27 H 1.08003 * 126.59021 * 180.02562 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7236 -4.2218 -1.0865 12 7 3.5319 -5.1664 -0.6898 13 6 3.5563 -5.1936 0.6510 14 6 4.3642 -6.1382 1.5030 15 6 4.5557 -5.7726 2.9763 16 6 5.7272 -5.6517 1.9997 17 6 2.7314 -4.2295 1.1023 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8904 21 1 2.5070 -3.9690 -2.1139 22 1 4.2670 -7.1952 1.2550 23 1 4.0969 -4.8490 3.3294 24 1 4.5843 -6.5890 3.6980 25 1 6.5265 -6.3885 2.0787 26 1 6.0396 -4.6484 1.7098 27 1 2.5267 -3.9888 2.1351 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259468391.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:00 Heat of formation + Delta-G solvation = 58.424667 kcal Electronic energy + Delta-G solvation = -11331.692038 eV Core-core repulsion = 9283.384651 eV Total energy + Delta-G solvation = -2048.307387 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.83261 -37.93573 -35.81457 -33.82134 -30.18934 -29.17316 -25.46948 -23.86618 -23.26444 -21.70897 -20.40206 -18.87590 -17.97610 -16.59999 -16.23350 -15.78429 -15.17871 -14.79232 -14.61573 -14.26230 -13.66896 -13.18170 -12.74533 -12.65590 -12.31860 -12.28744 -11.96737 -11.44146 -11.29702 -10.84892 -10.68240 -10.26054 -9.12573 -8.39382 -6.56164 1.29579 1.37066 1.39757 1.49892 2.15837 2.22592 2.38292 2.93401 3.04565 3.63384 4.08156 4.15601 4.20987 4.29605 4.46503 4.71381 4.79806 4.84751 4.88546 5.06927 5.33432 5.34644 5.49936 5.68673 5.75888 5.96571 6.35298 6.62186 7.16396 7.26112 8.68577 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049809 B = 0.008942 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.015318 B = 3130.441450 C = 3354.727665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.561 4.561 8 H 0.053 0.947 9 C 0.245 3.755 10 N -0.437 5.437 11 C 0.165 3.835 12 N -0.525 5.525 13 C 0.002 3.998 14 C -0.082 4.082 15 C -0.157 4.157 16 C -0.168 4.168 17 C -0.062 4.062 18 H 0.274 0.726 19 H 0.042 0.958 20 H 0.035 0.965 21 H 0.215 0.785 22 H 0.118 0.882 23 H 0.088 0.912 24 H 0.125 0.875 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 -6.692 3.973 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.599 4.599 8 H 0.071 0.929 9 C 0.125 3.875 10 N -0.115 5.115 11 C -0.117 4.117 12 N -0.245 5.245 13 C -0.128 4.128 14 C -0.101 4.101 15 C -0.195 4.195 16 C -0.205 4.205 17 C -0.198 4.198 18 H 0.083 0.917 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.232 0.768 22 H 0.136 0.864 23 H 0.107 0.893 24 H 0.143 0.857 25 H 0.137 0.863 26 H 0.092 0.908 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.093 -6.944 3.437 9.856 hybrid contribution -0.474 1.606 0.248 1.693 sum 5.619 -5.338 3.686 8.582 Atomic orbital electron populations 1.69996 1.07360 1.28967 1.49189 1.25739 0.95760 1.02785 0.93478 0.85347 0.78340 0.78028 0.78761 1.19452 1.19884 1.19678 1.21470 0.93293 0.91080 1.54026 0.92885 1.19427 0.87195 0.82179 0.98727 1.45954 1.33173 1.25744 1.06622 1.25179 0.97556 0.94057 0.94915 1.70029 1.20892 1.21359 1.12188 1.20138 1.02365 1.00031 0.90310 1.20038 0.98390 0.97004 0.94648 1.23057 1.01362 1.03905 0.91151 1.22983 0.91694 1.02378 1.03471 1.22644 1.03738 0.99801 0.93571 0.91696 0.93961 0.94705 0.76818 0.86398 0.89330 0.85707 0.86337 0.90792 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.49 13.29 21.45 0.28 -50.20 15 2 C 0.02 1.26 5.46 84.66 0.46 1.72 15 3 Si 0.97 41.81 29.54 68.60 2.03 43.84 15 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.56 -30.11 9.39 25.60 0.24 -29.87 15 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 15 9 C 0.25 12.16 5.90 85.63 0.51 12.66 15 10 N -0.44 -19.56 2.73 -533.15 -1.46 -21.02 15 11 C 0.17 6.96 12.56 180.26 2.26 9.23 15 12 N -0.52 -22.28 11.25 -188.32 -2.12 -24.40 15 13 C 0.00 0.06 6.74 41.39 0.28 0.34 15 14 C -0.08 -2.45 6.33 -11.54 -0.07 -2.52 15 15 C -0.16 -3.72 10.00 30.60 0.31 -3.41 15 16 C -0.17 -4.30 10.23 30.60 0.31 -3.99 15 17 C -0.06 -2.53 10.87 83.09 0.90 -1.63 15 18 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 19 H 0.04 2.14 8.14 -2.39 -0.02 2.12 15 20 H 0.03 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.22 7.73 8.06 -2.91 -0.02 7.71 15 22 H 0.12 3.24 8.14 -2.39 -0.02 3.22 15 23 H 0.09 2.22 7.14 -2.39 -0.02 2.21 15 24 H 0.12 2.19 8.14 -2.38 -0.02 2.17 15 25 H 0.12 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.07 2.17 8.14 -2.38 -0.02 2.16 15 27 H 0.17 6.40 7.35 -2.91 -0.02 6.38 15 Total: -1.00 -60.12 243.13 5.08 -55.03 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.15 Total: 14.23 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.20 Total: -17.48 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -3.29 Total: -95.63 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -60.12 5.08 -55.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259468391.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.458 kcal (2) G-P(sol) polarization free energy of solvation -60.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds