Wall clock time and date at job start Mon Mar 30 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 111.00133 * 2 1 4 4 H 1.09006 * 109.46683 * 318.81921 * 3 2 1 5 5 C 1.50692 * 109.47369 * 198.81772 * 3 2 1 6 6 H 1.07998 * 120.00660 * 245.25298 * 5 3 2 7 7 C 1.37882 * 120.00004 * 65.24763 * 5 3 2 8 8 N 1.31511 * 120.00097 * 188.01383 * 7 5 3 9 9 Si 1.86801 * 119.99807 * 8.02033 * 7 5 3 10 10 H 1.48506 * 109.47149 * 91.69663 * 9 7 5 11 11 H 1.48502 * 109.46846 * 211.69379 * 9 7 5 12 12 H 1.48492 * 109.47183 * 331.69524 * 9 7 5 13 13 C 1.50699 * 109.47155 * 78.81640 * 3 2 1 14 14 C 1.38673 * 120.42301 * 226.66451 * 13 3 2 15 15 C 1.38629 * 118.42226 * 180.02562 * 14 13 3 16 16 C 1.38223 * 119.16138 * 359.97438 * 15 14 13 17 17 N 1.31858 * 120.76386 * 0.02562 * 16 15 14 18 18 C 1.31886 * 121.72500 * 359.70539 * 17 16 15 19 19 H 1.09005 * 109.46963 * 294.48473 * 1 2 3 20 20 H 1.09000 * 109.46697 * 174.48850 * 1 2 3 21 21 H 1.09003 * 109.47182 * 54.48731 * 1 2 3 22 22 H 1.00901 * 111.00362 * 123.95436 * 2 1 3 23 23 H 0.96997 * 119.99998 * 180.02562 * 8 7 5 24 24 H 1.07997 * 120.78386 * 359.97438 * 14 13 3 25 25 H 1.07994 * 120.41432 * 180.02562 * 15 14 13 26 26 H 1.07994 * 119.61766 * 179.97438 * 16 15 14 27 27 H 1.08004 * 119.61715 * 180.31361 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.4036 1.9878 -0.6767 5 6 3.4310 1.3585 -0.4583 6 1 4.2182 1.6445 0.2235 7 6 3.7395 0.9813 -1.7481 8 7 4.9953 0.8175 -2.1027 9 14 2.3738 0.7033 -2.9919 10 1 2.1094 1.9661 -3.7273 11 1 2.7862 -0.3518 -3.9522 12 1 1.1403 0.2746 -2.2850 13 6 1.9183 1.9392 1.3938 14 6 1.4125 3.2128 1.6063 15 6 1.3611 3.6941 2.9053 16 6 1.8118 2.8940 3.9384 17 7 2.2866 1.6874 3.6991 18 6 2.3457 1.1951 2.4770 19 1 -0.3633 0.4259 0.9353 20 1 -0.3633 -1.0229 -0.0987 21 1 -0.3634 0.5970 -0.8365 22 1 1.8307 -0.5261 0.7813 23 1 5.2123 0.5525 -3.0102 24 1 1.0678 3.8157 0.7792 25 1 0.9729 4.6814 3.1076 26 1 1.7755 3.2617 4.9531 27 1 2.7364 0.2004 2.3205 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259490985.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:19 Heat of formation + Delta-G solvation = 18.979682 kcal Electronic energy + Delta-G solvation = -11758.785395 eV Core-core repulsion = 9708.767545 eV Total energy + Delta-G solvation = -2050.017850 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.10347 -37.57641 -34.32531 -33.30588 -32.05661 -29.33000 -25.65849 -24.90300 -24.10741 -21.86309 -19.13293 -18.07912 -17.06230 -16.71322 -16.29968 -15.48030 -14.87665 -14.71933 -14.64125 -14.19288 -13.89548 -13.44994 -13.21808 -12.66864 -12.47796 -12.14344 -11.74288 -11.40705 -10.71835 -10.59579 -10.32512 -9.75683 -9.03044 -8.24159 -6.35130 0.29322 0.43777 1.46799 1.52537 1.75788 2.53792 2.94978 3.08648 3.59771 3.89056 4.05063 4.07533 4.26243 4.26549 4.56362 4.68850 4.72335 4.91335 4.96434 5.04704 5.25380 5.45744 5.55992 5.87417 6.17668 6.40719 6.75907 6.80475 7.09040 7.40617 8.89936 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045971 B = 0.012897 C = 0.011771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.934170 B = 2170.567400 C = 2378.181557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.233 3.767 4 H 0.048 0.952 5 C -0.513 4.513 6 H 0.023 0.977 7 C 0.034 3.966 8 N -0.947 5.947 9 Si 0.949 3.051 10 H -0.289 1.289 11 H -0.303 1.303 12 H -0.204 1.204 13 C -0.137 4.137 14 C -0.092 4.092 15 C -0.161 4.161 16 C 0.069 3.931 17 N -0.508 5.508 18 C 0.082 3.918 19 H 0.015 0.985 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.333 0.667 23 H 0.264 0.736 24 H 0.144 0.856 25 H 0.170 0.830 26 H 0.184 0.816 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 3.708 6.915 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.325 5.325 3 C 0.124 3.876 4 H 0.066 0.934 5 C -0.551 4.551 6 H 0.041 0.959 7 C -0.166 4.166 8 N -0.586 5.586 9 Si 0.773 3.227 10 H -0.216 1.216 11 H -0.231 1.231 12 H -0.125 1.125 13 C -0.141 4.141 14 C -0.118 4.118 15 C -0.180 4.180 16 C -0.089 4.089 17 N -0.217 5.217 18 C -0.074 4.074 19 H 0.034 0.966 20 H 0.092 0.908 21 H 0.077 0.923 22 H 0.152 0.848 23 H 0.073 0.927 24 H 0.161 0.839 25 H 0.187 0.813 26 H 0.201 0.799 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.291 3.051 6.810 13.534 hybrid contribution -0.118 0.527 -0.625 0.826 sum -11.409 3.578 6.185 13.462 Atomic orbital electron populations 1.22222 0.88667 1.01988 0.99298 1.61211 1.06900 1.15059 1.49282 1.18373 0.94271 0.86636 0.88341 0.93434 1.20919 0.91083 1.45898 0.97181 0.95863 1.25817 0.97530 0.92514 1.00700 1.70104 1.20481 1.48264 1.19738 0.85766 0.83104 0.76637 0.77181 1.21634 1.23052 1.12531 1.21916 0.97064 0.96428 0.98645 1.21835 0.96815 0.94572 0.98608 1.22451 1.00734 1.02346 0.92499 1.23272 0.94922 0.89500 1.01164 1.67633 1.14922 1.15625 1.23530 1.22425 0.96950 1.00290 0.87765 0.96619 0.90802 0.92348 0.84780 0.92707 0.83863 0.81300 0.79897 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.87 127.69 1.26 2.15 15 2 N -0.69 -27.81 4.75 -522.46 -2.48 -30.29 15 3 C 0.23 10.25 1.54 43.42 0.07 10.31 15 4 H 0.05 2.07 6.56 -2.38 -0.02 2.05 15 5 C -0.51 -28.62 9.18 25.60 0.23 -28.39 15 6 H 0.02 1.47 7.99 -2.91 -0.02 1.45 15 7 C 0.03 1.94 5.46 84.66 0.46 2.40 15 8 N -0.95 -59.33 13.96 21.45 0.30 -59.03 15 9 Si 0.95 44.36 26.84 68.60 1.84 46.20 15 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 15 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 15 12 H -0.20 -8.54 4.63 99.48 0.46 -8.08 15 13 C -0.14 -5.37 4.42 -19.77 -0.09 -5.46 15 14 C -0.09 -3.00 9.81 22.47 0.22 -2.78 15 15 C -0.16 -4.25 10.11 22.36 0.23 -4.03 15 16 C 0.07 1.95 11.18 84.69 0.95 2.90 15 17 N -0.51 -18.29 10.36 -195.84 -2.03 -20.32 15 18 C 0.08 3.21 10.22 84.67 0.87 4.07 15 19 H 0.02 0.47 7.89 -2.38 -0.02 0.45 15 20 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.06 1.85 7.27 -2.39 -0.02 1.83 15 22 H 0.33 12.97 6.92 -89.69 -0.62 12.35 15 23 H 0.26 15.60 8.31 -92.71 -0.77 14.83 15 24 H 0.14 4.14 8.04 -2.91 -0.02 4.12 15 25 H 0.17 2.97 8.06 -2.91 -0.02 2.95 15 26 H 0.18 3.68 8.06 -2.91 -0.02 3.66 15 27 H 0.14 5.60 6.86 -2.91 -0.02 5.58 15 Total: -1.00 -67.53 230.63 2.12 -65.41 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.30 Total: 16.86 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.20 Total: -18.82 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.21 Total: -109.64 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.84 Total: 46.20 kcal Total: -67.53 2.12 -65.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259490985.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.386 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds