Wall clock time and date at job start Mon Mar 30 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32156 * 120.00300 * 2 1 4 4 C 1.32125 * 120.00375 * 179.71915 * 3 2 1 5 5 C 1.38392 * 119.99565 * 0.53700 * 4 3 2 6 6 N 1.32132 * 119.99730 * 359.46601 * 5 4 3 7 7 C 1.32157 * 120.00036 * 0.24561 * 6 5 4 8 8 C 1.50692 * 119.99969 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47112 * 173.76322 * 8 7 6 10 10 C 1.53002 * 109.47094 * 293.76016 * 8 7 6 11 11 C 1.50698 * 109.47378 * 53.75914 * 8 7 6 12 12 H 1.08000 * 119.99805 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00608 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99588 * 0.02562 * 13 11 8 15 15 Si 1.86792 * 120.00484 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47339 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47096 * 120.00110 * 15 13 11 18 18 H 1.48496 * 109.47256 * 240.00237 * 15 13 11 19 19 H 1.09004 * 109.46687 * 264.25600 * 1 2 3 20 20 H 1.09001 * 109.47178 * 24.25485 * 1 2 3 21 21 H 1.08995 * 109.47222 * 144.25764 * 1 2 3 22 22 H 1.07995 * 120.00292 * 180.25318 * 4 3 2 23 23 H 1.07996 * 120.00284 * 179.73616 * 5 4 3 24 24 H 1.09008 * 109.47166 * 179.97438 * 10 8 7 25 25 H 1.09000 * 109.47457 * 300.00185 * 10 8 7 26 26 H 1.09007 * 109.46810 * 60.00094 * 10 8 7 27 27 H 0.97000 * 119.99882 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0056 5 6 4.1810 -0.0540 0.0003 6 7 3.5202 -1.1983 0.0002 7 6 2.1986 -1.1982 0.0003 8 6 1.4451 -2.5032 0.0009 9 1 0.3788 -2.3069 0.1126 10 6 1.6933 -3.2359 -1.3192 11 6 1.9214 -3.3579 1.1470 12 1 2.6924 -2.9924 1.8091 13 6 1.3722 -4.6060 1.3510 14 7 0.4330 -5.0508 0.5450 15 14 1.9621 -5.6650 2.7721 16 1 3.0173 -4.9404 3.5249 17 1 0.8220 -5.9586 3.6773 18 1 2.5156 -6.9379 2.2444 19 1 -0.3633 -0.1029 1.0226 20 1 -0.3633 0.9370 -0.4222 21 1 -0.3633 -0.8341 -0.6003 22 1 4.0290 2.0797 0.0097 23 1 5.2609 -0.0541 0.0005 24 1 1.1485 -4.1801 -1.3186 25 1 1.3488 -2.6178 -2.1482 26 1 2.7597 -3.4321 -1.4309 27 1 0.0469 -5.9290 0.6883 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259532990.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:09 Heat of formation + Delta-G solvation = 34.076027 kcal Electronic energy + Delta-G solvation = -11745.007150 eV Core-core repulsion = 9695.643927 eV Total energy + Delta-G solvation = -2049.363224 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46531 -34.91744 -33.73674 -32.14689 -29.56453 -27.35415 -25.16664 -23.98347 -22.16764 -20.19658 -17.25275 -16.11713 -15.67613 -15.04892 -14.36644 -14.26264 -13.04090 -12.73581 -12.32896 -12.17722 -11.65448 -11.54002 -10.97636 -10.94843 -10.83716 -10.50815 -10.23003 -10.10504 -9.86500 -9.03432 -8.40840 -8.23231 -8.18635 -6.03135 -4.07561 1.46899 1.85526 3.29646 3.37527 3.43220 4.33975 4.47035 4.64987 4.96424 5.16107 5.29841 5.41190 5.74095 5.84251 6.09067 6.16725 6.31592 6.47413 6.79982 6.91848 7.11322 7.21482 7.58482 7.83596 7.96958 8.06790 8.30933 8.61597 8.93032 9.55626 11.03206 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.046464 B = 0.011910 C = 0.010941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.466093 B = 2350.354497 C = 2558.572503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.061 3.939 3 N -0.448 5.448 4 C 0.012 3.988 5 C 0.036 3.964 6 N -0.426 5.426 7 C 0.135 3.865 8 C 0.081 3.919 9 H 0.054 0.946 10 C -0.129 4.129 11 C -0.495 4.495 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 H 0.079 0.921 20 H 0.067 0.933 21 H 0.085 0.915 22 H 0.156 0.844 23 H 0.156 0.844 24 H 0.090 0.910 25 H 0.005 0.995 26 H 0.035 0.965 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 7.587 -1.427 8.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 N -0.164 5.164 4 C -0.147 4.147 5 C -0.124 4.124 6 N -0.140 5.140 7 C -0.006 4.006 8 C 0.061 3.939 9 H 0.072 0.928 10 C -0.187 4.187 11 C -0.534 4.534 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.209 1.209 19 H 0.097 0.903 20 H 0.086 0.914 21 H 0.104 0.896 22 H 0.173 0.827 23 H 0.174 0.826 24 H 0.109 0.891 25 H 0.024 0.976 26 H 0.054 0.946 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.150 7.437 -1.454 7.877 hybrid contribution 0.588 -0.489 0.797 1.105 sum 2.738 6.948 -0.657 7.497 Atomic orbital electron populations 1.20667 0.88259 1.02962 1.03422 1.22170 0.98305 0.89315 0.98282 1.68129 1.08875 1.29796 1.09557 1.23423 0.91061 0.99245 1.00986 1.23724 1.01437 0.89476 0.97760 1.68445 1.09172 1.28240 1.08101 1.23102 0.90105 0.97887 0.89456 1.18020 0.94503 0.85616 0.95728 0.92822 1.21736 1.00554 1.02122 0.94337 1.20992 1.20900 1.00442 1.11030 0.92385 1.24918 0.94964 0.97611 0.96521 1.69875 1.26847 1.19076 1.37357 0.86467 0.78609 0.80307 0.82252 1.19853 1.21031 1.20931 0.90288 0.91422 0.89594 0.82696 0.82640 0.89134 0.97573 0.94555 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.29 36.00 0.33 -1.29 15 2 C 0.06 1.22 6.79 -82.41 -0.56 0.66 15 3 N -0.45 -8.47 10.42 -9.29 -0.10 -8.56 15 4 C 0.01 0.20 11.23 -17.37 -0.19 0.01 15 5 C 0.04 0.63 11.23 -17.37 -0.19 0.43 15 6 N -0.43 -9.40 10.06 -9.29 -0.09 -9.49 15 7 C 0.13 3.05 5.41 -82.41 -0.45 2.61 15 8 C 0.08 2.01 2.28 -92.93 -0.21 1.80 15 9 H 0.05 1.34 5.74 -51.93 -0.30 1.05 15 10 C -0.13 -3.15 8.93 37.16 0.33 -2.82 15 11 C -0.50 -13.64 8.36 -34.44 -0.29 -13.93 15 12 H 0.06 1.66 7.66 -52.49 -0.40 1.25 15 13 C 0.06 1.66 5.30 -17.82 -0.09 1.57 15 14 N -0.89 -24.86 11.32 55.43 0.63 -24.23 15 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 15 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 19 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 20 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.09 1.47 6.56 -51.93 -0.34 1.13 15 22 H 0.16 1.88 8.06 -52.49 -0.42 1.46 15 23 H 0.16 2.10 8.06 -52.49 -0.42 1.68 15 24 H 0.09 2.37 6.07 -51.92 -0.32 2.05 15 25 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 15 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.26 6.91 8.31 -40.82 -0.34 6.58 15 LS Contribution 234.49 15.07 3.53 3.53 Total: -1.00 -29.89 234.49 -5.40 -35.29 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -3.03 Total: -1.96 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.32 Total: -10.96 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.44 Total: -42.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.89 -5.40 -35.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532990.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.369 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds