Wall clock time and date at job start Mon Mar 30 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32156 * 120.00300 * 2 1 4 4 C 1.32125 * 120.00375 * 179.71915 * 3 2 1 5 5 C 1.38392 * 119.99565 * 0.53700 * 4 3 2 6 6 N 1.32132 * 119.99730 * 359.46601 * 5 4 3 7 7 C 1.32157 * 120.00036 * 0.24561 * 6 5 4 8 8 C 1.50692 * 119.99969 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47112 * 173.76322 * 8 7 6 10 10 C 1.53002 * 109.47094 * 293.76016 * 8 7 6 11 11 C 1.50698 * 109.47378 * 53.75914 * 8 7 6 12 12 H 1.08000 * 119.99805 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00608 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99588 * 0.02562 * 13 11 8 15 15 Si 1.86792 * 120.00484 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47339 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47096 * 120.00110 * 15 13 11 18 18 H 1.48496 * 109.47256 * 240.00237 * 15 13 11 19 19 H 1.09004 * 109.46687 * 264.25600 * 1 2 3 20 20 H 1.09001 * 109.47178 * 24.25485 * 1 2 3 21 21 H 1.08995 * 109.47222 * 144.25764 * 1 2 3 22 22 H 1.07995 * 120.00292 * 180.25318 * 4 3 2 23 23 H 1.07996 * 120.00284 * 179.73616 * 5 4 3 24 24 H 1.09008 * 109.47166 * 179.97438 * 10 8 7 25 25 H 1.09000 * 109.47457 * 300.00185 * 10 8 7 26 26 H 1.09007 * 109.46810 * 60.00094 * 10 8 7 27 27 H 0.97000 * 119.99882 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0056 5 6 4.1810 -0.0540 0.0003 6 7 3.5202 -1.1983 0.0002 7 6 2.1986 -1.1982 0.0003 8 6 1.4451 -2.5032 0.0009 9 1 0.3788 -2.3069 0.1126 10 6 1.6933 -3.2359 -1.3192 11 6 1.9214 -3.3579 1.1470 12 1 2.6924 -2.9924 1.8091 13 6 1.3722 -4.6060 1.3510 14 7 0.4330 -5.0508 0.5450 15 14 1.9621 -5.6650 2.7721 16 1 3.0173 -4.9404 3.5249 17 1 0.8220 -5.9586 3.6773 18 1 2.5156 -6.9379 2.2444 19 1 -0.3633 -0.1029 1.0226 20 1 -0.3633 0.9370 -0.4222 21 1 -0.3633 -0.8341 -0.6003 22 1 4.0290 2.0797 0.0097 23 1 5.2609 -0.0541 0.0005 24 1 1.1485 -4.1801 -1.3186 25 1 1.3488 -2.6178 -2.1482 26 1 2.7597 -3.4321 -1.4309 27 1 0.0469 -5.9290 0.6883 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259532990.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:09 Heat of formation + Delta-G solvation = 14.551081 kcal Electronic energy + Delta-G solvation = -11745.853816 eV Core-core repulsion = 9695.643927 eV Total energy + Delta-G solvation = -2050.209889 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.94659 -36.73087 -35.22723 -33.96078 -31.34282 -28.76105 -27.23531 -25.62816 -23.61076 -22.00479 -18.91276 -17.92963 -17.27253 -16.70236 -15.93067 -15.87574 -14.67442 -14.64424 -13.78162 -13.57402 -13.40710 -13.18466 -12.86320 -12.84345 -12.42384 -12.32421 -12.12997 -11.84006 -11.69753 -11.00542 -10.46662 -9.74025 -9.71757 -8.10633 -6.21585 0.02644 0.37010 1.39719 1.42143 1.53180 2.43144 2.91491 3.17701 3.31827 3.52970 3.76455 4.06664 4.34682 4.52613 4.67593 4.73957 4.84809 4.93604 5.07273 5.13350 5.19787 5.55598 5.62672 5.84625 5.98918 6.29476 6.56556 6.81367 7.11635 7.44061 8.94523 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.046464 B = 0.011910 C = 0.010941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.466093 B = 2350.354497 C = 2558.572503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.050 3.950 3 N -0.457 5.457 4 C 0.032 3.968 5 C 0.034 3.966 6 N -0.462 5.462 7 C 0.100 3.900 8 C 0.081 3.919 9 H 0.045 0.955 10 C -0.117 4.117 11 C -0.511 4.511 12 H 0.040 0.960 13 C 0.018 3.982 14 N -0.913 5.913 15 Si 0.953 3.047 16 H -0.277 1.277 17 H -0.276 1.276 18 H -0.278 1.278 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.078 0.922 22 H 0.207 0.793 23 H 0.197 0.803 24 H 0.068 0.932 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 9.002 -1.146 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 N -0.172 5.172 4 C -0.129 4.129 5 C -0.127 4.127 6 N -0.177 5.177 7 C -0.039 4.039 8 C 0.061 3.939 9 H 0.063 0.937 10 C -0.175 4.175 11 C -0.550 4.550 12 H 0.058 0.942 13 C -0.181 4.181 14 N -0.553 5.553 15 Si 0.779 3.221 16 H -0.202 1.202 17 H -0.201 1.201 18 H -0.204 1.204 19 H 0.099 0.901 20 H 0.109 0.891 21 H 0.097 0.903 22 H 0.224 0.776 23 H 0.214 0.786 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.034 8.840 -1.177 9.420 hybrid contribution 0.418 -0.806 0.690 1.140 sum 3.452 8.034 -0.487 8.758 Atomic orbital electron populations 1.20674 0.86849 1.03868 1.03580 1.22357 0.99451 0.88938 0.98126 1.68259 1.10164 1.28810 1.10005 1.24268 0.90372 1.00932 0.97316 1.24423 1.03264 0.88586 0.96403 1.68302 1.09308 1.31029 1.09014 1.22709 0.90724 0.97582 0.92918 1.17834 0.94366 0.86902 0.94765 0.93733 1.21549 0.99252 1.01393 0.95297 1.21160 1.20608 1.01332 1.11860 0.94186 1.25594 0.95150 0.98636 0.98708 1.69967 1.27450 1.19444 1.38424 0.85581 0.78191 0.78685 0.79631 1.20199 1.20108 1.20396 0.90127 0.89107 0.90333 0.77629 0.78632 0.91314 0.95744 0.95780 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 9.29 71.23 0.66 -2.42 15 2 C 0.05 1.99 6.79 42.54 0.29 2.28 15 3 N -0.46 -16.06 10.42 -183.29 -1.91 -17.97 15 4 C 0.03 0.92 11.23 84.69 0.95 1.87 15 5 C 0.03 1.09 11.23 84.68 0.95 2.04 15 6 N -0.46 -20.05 10.06 -183.29 -1.84 -21.89 15 7 C 0.10 4.51 5.41 42.53 0.23 4.74 15 8 C 0.08 4.10 2.28 -12.29 -0.03 4.08 15 9 H 0.04 2.30 5.74 -2.39 -0.01 2.29 15 10 C -0.12 -5.81 8.93 71.98 0.64 -5.17 15 11 C -0.51 -28.75 8.36 25.60 0.21 -28.54 15 12 H 0.04 2.34 7.66 -2.91 -0.02 2.31 15 13 C 0.02 0.99 5.30 84.65 0.45 1.44 15 14 N -0.91 -51.57 11.32 21.45 0.24 -51.33 15 15 Si 0.95 44.21 29.54 68.60 2.03 46.23 15 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 19 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 20 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 21 H 0.08 2.71 6.56 -2.39 -0.02 2.69 15 22 H 0.21 3.77 8.06 -2.91 -0.02 3.75 15 23 H 0.20 4.48 8.06 -2.91 -0.02 4.46 15 24 H 0.07 3.69 6.07 -2.38 -0.01 3.68 15 25 H 0.02 1.06 8.14 -2.39 -0.02 1.05 15 26 H 0.02 1.19 8.14 -2.38 -0.02 1.17 15 27 H 0.26 14.08 8.31 -92.71 -0.77 13.31 15 Total: -1.00 -64.51 234.49 4.03 -60.48 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.16 Total: 4.18 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 4.36 Total: -19.69 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -3.51 Total: -91.20 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.51 4.03 -60.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532990.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.027 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds