Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99565 * 2 1 4 4 H 1.08997 * 109.47893 * 323.76294 * 3 2 1 5 5 C 1.50708 * 109.46847 * 203.76649 * 3 2 1 6 6 H 1.07999 * 119.99832 * 244.63621 * 5 3 2 7 7 C 1.37873 * 119.99673 * 64.63485 * 5 3 2 8 8 N 1.31511 * 120.00408 * 6.72910 * 7 5 3 9 9 Si 1.86810 * 119.99560 * 186.72482 * 7 5 3 10 10 H 1.48500 * 109.46644 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47361 * 300.00160 * 9 7 5 12 12 H 1.48505 * 109.46911 * 60.00458 * 9 7 5 13 13 C 1.50703 * 109.47072 * 83.77096 * 3 2 1 14 14 C 1.38643 * 120.78729 * 46.30781 * 13 3 2 15 15 C 1.38211 * 119.15650 * 179.75527 * 14 13 3 16 16 N 1.31864 * 120.76647 * 0.53494 * 15 14 13 17 17 C 1.31873 * 121.72497 * 359.73683 * 16 15 14 18 18 C 1.38206 * 120.76351 * 359.97438 * 17 16 15 19 19 H 1.08998 * 109.46890 * 304.67381 * 1 2 3 20 20 H 1.09006 * 109.47213 * 64.67626 * 1 2 3 21 21 H 1.09002 * 109.46874 * 184.67175 * 1 2 3 22 22 H 1.00893 * 111.00414 * 123.95600 * 2 1 3 23 23 H 0.96997 * 119.99660 * 355.29120 * 8 7 5 24 24 H 1.08001 * 120.42569 * 0.02562 * 14 13 3 25 25 H 1.08003 * 119.61895 * 180.24824 * 15 14 13 26 26 H 1.08000 * 119.61987 * 179.97438 * 17 16 15 27 27 H 1.08003 * 120.41765 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3518 2.0078 -0.6074 5 6 3.3894 1.3745 -0.5726 6 1 4.2281 1.6500 0.0495 7 6 3.5939 1.0255 -1.8907 8 7 2.5652 0.8188 -2.6835 9 14 5.3325 0.8465 -2.5505 10 1 5.2807 0.4667 -3.9851 11 1 6.0524 2.1371 -2.4052 12 1 6.0461 -0.2074 -1.7854 13 6 2.0314 1.8957 1.4125 14 6 2.5420 1.1223 2.4436 15 6 2.5634 1.6385 3.7255 16 7 2.0963 2.8463 3.9743 17 6 1.5985 3.6075 3.0193 18 6 1.5496 3.1607 1.7124 19 1 -0.3633 0.5846 0.8451 20 1 -0.3634 0.4396 -0.9290 21 1 -0.3633 -1.0243 0.0837 22 1 1.8307 -0.5261 0.7813 23 1 1.6641 0.8445 -2.3254 24 1 2.9221 0.1307 2.2470 25 1 2.9632 1.0440 4.5338 26 1 1.2247 4.5914 3.2614 27 1 1.1404 3.7886 0.9348 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259580501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = 30.459743 kcal Electronic energy + Delta-G solvation = -11724.439321 eV Core-core repulsion = 9674.919284 eV Total energy + Delta-G solvation = -2049.520037 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67062 -36.05967 -32.15934 -31.57192 -30.68393 -27.06523 -23.80070 -23.39720 -22.62182 -20.61560 -17.05102 -16.51763 -15.62426 -15.05248 -14.30281 -13.73205 -13.58638 -13.26821 -12.93758 -12.86153 -12.34574 -11.67472 -11.33617 -10.89652 -10.71475 -10.31222 -10.08847 -9.37988 -9.05261 -8.68094 -8.58359 -8.25445 -7.35594 -6.32839 -4.11705 1.62076 1.87682 3.44346 3.46828 3.64767 4.32512 4.54183 4.85139 5.15773 5.32432 5.50471 5.63424 5.72386 5.73896 6.00010 6.08675 6.17305 6.19818 6.47214 6.62760 6.66540 7.06323 7.22672 7.86523 8.18340 8.38428 8.39869 8.53875 8.88476 9.69551 11.06814 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040076 B = 0.012424 C = 0.010831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.504820 B = 2253.235654 C = 2584.568396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.672 5.672 3 C 0.233 3.767 4 H 0.042 0.958 5 C -0.597 4.597 6 H 0.048 0.952 7 C 0.042 3.958 8 N -0.888 5.888 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.287 1.287 13 C -0.022 4.022 14 C -0.171 4.171 15 C 0.088 3.912 16 N -0.506 5.506 17 C 0.088 3.912 18 C -0.177 4.177 19 H 0.002 0.998 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.323 0.677 23 H 0.279 0.721 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 0.958 7.278 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.302 5.302 3 C 0.126 3.874 4 H 0.059 0.941 5 C -0.636 4.636 6 H 0.066 0.934 7 C -0.167 4.167 8 N -0.522 5.522 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.032 4.032 14 C -0.191 4.191 15 C -0.069 4.069 16 N -0.216 5.216 17 C -0.069 4.069 18 C -0.197 4.197 19 H 0.020 0.980 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.141 0.859 23 H 0.091 0.909 24 H 0.148 0.852 25 H 0.164 0.836 26 H 0.163 0.837 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.020 0.887 6.048 6.197 hybrid contribution -1.085 0.246 1.507 1.873 sum -2.105 1.133 7.554 7.923 Atomic orbital electron populations 1.22187 0.91318 0.99624 0.99243 1.61309 1.04280 1.16256 1.48369 1.18593 0.97654 0.85629 0.85544 0.94057 1.21654 0.90562 1.52490 0.98852 0.93375 1.25678 1.05149 0.92690 0.93189 1.70642 1.00503 1.43337 1.37680 0.83595 0.74201 0.76463 0.76213 1.20784 1.21659 1.21389 1.21776 0.89332 0.93116 0.98972 1.21955 1.01764 1.01906 0.93491 1.22587 0.96458 0.92121 0.95697 1.67576 1.11402 1.06020 1.36643 1.22581 0.96304 0.98756 0.89228 1.22079 1.02708 0.97290 0.97657 0.97972 0.92462 0.93146 0.85899 0.90937 0.85160 0.83618 0.83661 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.49 60.07 0.63 1.14 15 2 N -0.67 -15.04 5.85 -116.48 -0.68 -15.72 15 3 C 0.23 5.57 1.66 -70.01 -0.12 5.46 15 4 H 0.04 1.07 7.25 -51.93 -0.38 0.70 15 5 C -0.60 -16.18 8.64 -34.44 -0.30 -16.48 15 6 H 0.05 1.33 7.75 -52.49 -0.41 0.92 15 7 C 0.04 1.17 5.38 -17.82 -0.10 1.07 15 8 N -0.89 -26.12 13.60 55.43 0.75 -25.36 15 9 Si 1.07 24.79 29.91 -169.99 -5.08 19.71 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 13 C -0.02 -0.46 4.55 -104.32 -0.47 -0.94 15 14 C -0.17 -3.23 9.08 -39.44 -0.36 -3.59 15 15 C 0.09 1.51 11.18 -17.55 -0.20 1.31 15 16 N -0.51 -9.15 10.36 -13.25 -0.14 -9.29 15 17 C 0.09 1.51 11.18 -17.55 -0.20 1.31 15 18 C -0.18 -3.35 9.77 -39.44 -0.39 -3.73 15 19 H 0.00 0.03 7.87 -51.93 -0.41 -0.37 15 20 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.32 6.73 6.86 -39.30 -0.27 6.46 15 23 H 0.28 8.18 6.65 -40.82 -0.27 7.91 15 24 H 0.13 2.35 6.97 -52.49 -0.37 1.98 15 25 H 0.15 2.02 8.06 -52.48 -0.42 1.60 15 26 H 0.15 2.00 8.06 -52.49 -0.42 1.58 15 27 H 0.13 2.23 8.04 -52.48 -0.42 1.81 15 LS Contribution 236.75 15.07 3.57 3.57 Total: -1.00 -30.04 236.75 -6.08 -36.12 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.01 Total: 5.41 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.49 Total: -14.44 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.07 Total: -50.38 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.04 -6.08 -36.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.582 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds