Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99565 * 2 1 4 4 H 1.08997 * 109.47893 * 323.76294 * 3 2 1 5 5 C 1.50708 * 109.46847 * 203.76649 * 3 2 1 6 6 H 1.07999 * 119.99832 * 244.63621 * 5 3 2 7 7 C 1.37873 * 119.99673 * 64.63485 * 5 3 2 8 8 N 1.31511 * 120.00408 * 6.72910 * 7 5 3 9 9 Si 1.86810 * 119.99560 * 186.72482 * 7 5 3 10 10 H 1.48500 * 109.46644 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47361 * 300.00160 * 9 7 5 12 12 H 1.48505 * 109.46911 * 60.00458 * 9 7 5 13 13 C 1.50703 * 109.47072 * 83.77096 * 3 2 1 14 14 C 1.38643 * 120.78729 * 46.30781 * 13 3 2 15 15 C 1.38211 * 119.15650 * 179.75527 * 14 13 3 16 16 N 1.31864 * 120.76647 * 0.53494 * 15 14 13 17 17 C 1.31873 * 121.72497 * 359.73683 * 16 15 14 18 18 C 1.38206 * 120.76351 * 359.97438 * 17 16 15 19 19 H 1.08998 * 109.46890 * 304.67381 * 1 2 3 20 20 H 1.09006 * 109.47213 * 64.67626 * 1 2 3 21 21 H 1.09002 * 109.46874 * 184.67175 * 1 2 3 22 22 H 1.00893 * 111.00414 * 123.95600 * 2 1 3 23 23 H 0.96997 * 119.99660 * 355.29120 * 8 7 5 24 24 H 1.08001 * 120.42569 * 0.02562 * 14 13 3 25 25 H 1.08003 * 119.61895 * 180.24824 * 15 14 13 26 26 H 1.08000 * 119.61987 * 179.97438 * 17 16 15 27 27 H 1.08003 * 120.41765 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3518 2.0078 -0.6074 5 6 3.3894 1.3745 -0.5726 6 1 4.2281 1.6500 0.0495 7 6 3.5939 1.0255 -1.8907 8 7 2.5652 0.8188 -2.6835 9 14 5.3325 0.8465 -2.5505 10 1 5.2807 0.4667 -3.9851 11 1 6.0524 2.1371 -2.4052 12 1 6.0461 -0.2074 -1.7854 13 6 2.0314 1.8957 1.4125 14 6 2.5420 1.1223 2.4436 15 6 2.5634 1.6385 3.7255 16 7 2.0963 2.8463 3.9743 17 6 1.5985 3.6075 3.0193 18 6 1.5496 3.1607 1.7124 19 1 -0.3633 0.5846 0.8451 20 1 -0.3634 0.4396 -0.9290 21 1 -0.3633 -1.0243 0.0837 22 1 1.8307 -0.5261 0.7813 23 1 1.6641 0.8445 -2.3254 24 1 2.9221 0.1307 2.2470 25 1 2.9632 1.0440 4.5338 26 1 1.2247 4.5914 3.2614 27 1 1.1404 3.7886 0.9348 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259580501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = 9.864816 kcal Electronic energy + Delta-G solvation = -11725.332385 eV Core-core repulsion = 9674.919284 eV Total energy + Delta-G solvation = -2050.413101 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.13053 -37.79646 -34.18895 -33.11104 -32.08982 -28.87707 -25.66529 -25.03305 -24.08335 -22.31659 -19.02575 -18.07894 -17.10491 -16.47955 -15.98684 -15.58213 -15.19262 -14.77289 -14.53124 -14.40596 -14.22442 -13.43501 -12.90118 -12.59886 -12.41059 -12.14654 -11.91013 -11.17786 -10.51768 -10.49868 -10.16910 -10.07257 -9.10379 -8.48652 -6.29532 0.22065 0.37152 1.56672 1.63797 1.82732 2.60560 2.91303 3.22182 3.57871 3.83378 3.93206 3.95488 4.26052 4.27675 4.45764 4.56084 4.70400 4.74900 4.90378 4.93516 5.14682 5.50738 5.78766 5.91386 6.14348 6.51056 6.72968 6.75759 7.00392 7.59320 8.89038 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040076 B = 0.012424 C = 0.010831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.504820 B = 2253.235654 C = 2584.568396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.688 5.688 3 C 0.239 3.761 4 H 0.011 0.989 5 C -0.605 4.605 6 H 0.038 0.962 7 C -0.005 4.005 8 N -0.917 5.917 9 Si 1.110 2.890 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.273 1.273 13 C -0.048 4.048 14 C -0.178 4.178 15 C 0.095 3.905 16 N -0.513 5.513 17 C 0.096 3.904 18 C -0.190 4.190 19 H 0.010 0.990 20 H 0.043 0.957 21 H 0.075 0.925 22 H 0.331 0.669 23 H 0.268 0.732 24 H 0.134 0.866 25 H 0.183 0.817 26 H 0.182 0.818 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 0.998 8.869 9.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.319 5.319 3 C 0.132 3.868 4 H 0.029 0.971 5 C -0.644 4.644 6 H 0.056 0.944 7 C -0.208 4.208 8 N -0.552 5.552 9 Si 0.933 3.067 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.198 1.198 13 C -0.058 4.058 14 C -0.198 4.198 15 C -0.061 4.061 16 N -0.223 5.223 17 C -0.060 4.060 18 C -0.210 4.210 19 H 0.029 0.971 20 H 0.062 0.938 21 H 0.094 0.906 22 H 0.150 0.850 23 H 0.078 0.922 24 H 0.152 0.848 25 H 0.200 0.800 26 H 0.199 0.801 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.551 0.931 7.662 7.738 hybrid contribution -1.285 0.262 1.107 1.716 sum -1.836 1.192 8.769 9.038 Atomic orbital electron populations 1.22133 0.89383 1.01215 0.98859 1.61041 1.06217 1.15539 1.49116 1.18236 0.95487 0.86045 0.87074 0.97104 1.21943 0.91931 1.51613 0.98892 0.94400 1.26959 1.07783 0.92063 0.94029 1.70757 1.00444 1.45946 1.38057 0.83027 0.70685 0.77373 0.75597 1.21086 1.20215 1.19847 1.21595 0.91703 0.94580 0.97879 1.22045 1.01928 1.02029 0.93843 1.23107 0.95098 0.92023 0.95835 1.67712 1.11506 1.06375 1.36739 1.23083 0.94929 0.99891 0.88109 1.22220 1.03109 0.96763 0.98909 0.97106 0.93826 0.90647 0.84999 0.92172 0.84779 0.80026 0.80107 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.30 10.49 127.69 1.34 2.64 15 2 N -0.69 -30.92 5.85 -522.44 -3.06 -33.98 15 3 C 0.24 11.63 1.66 43.43 0.07 11.70 15 4 H 0.01 0.59 7.25 -2.39 -0.02 0.58 15 5 C -0.61 -33.19 8.64 25.60 0.22 -32.97 15 6 H 0.04 2.10 7.75 -2.91 -0.02 2.08 15 7 C -0.01 -0.30 5.38 84.65 0.46 0.15 15 8 N -0.92 -54.98 13.60 21.45 0.29 -54.69 15 9 Si 1.11 49.89 29.91 68.60 2.05 51.94 15 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 15 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 13 C -0.05 -1.97 4.55 -19.67 -0.09 -2.06 15 14 C -0.18 -6.47 9.08 22.36 0.20 -6.26 15 15 C 0.10 3.00 11.18 84.68 0.95 3.95 15 16 N -0.51 -16.96 10.36 -195.83 -2.03 -18.99 15 17 C 0.10 3.05 11.18 84.68 0.95 4.00 15 18 C -0.19 -6.99 9.77 22.36 0.22 -6.77 15 19 H 0.01 0.38 7.87 -2.39 -0.02 0.36 15 20 H 0.04 1.76 8.14 -2.38 -0.02 1.74 15 21 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.33 13.67 6.86 -89.70 -0.62 13.05 15 23 H 0.27 16.20 6.65 -92.71 -0.62 15.58 15 24 H 0.13 4.66 6.97 -2.91 -0.02 4.64 15 25 H 0.18 4.31 8.06 -2.91 -0.02 4.28 15 26 H 0.18 4.33 8.06 -2.91 -0.02 4.31 15 27 H 0.13 4.56 8.04 -2.91 -0.02 4.54 15 Total: -1.00 -63.97 236.75 2.27 -61.70 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.70 Total: 19.63 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 4.31 Total: -25.62 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.79 Total: -107.65 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.94 kcal Total: -63.97 2.27 -61.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.566 kcal (2) G-P(sol) polarization free energy of solvation -63.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds