Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48501 * 109.47294 * 239.99580 * 3 2 1 5 5 H 1.48500 * 109.47450 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47248 * 120.00037 * 3 2 1 7 7 C 1.37873 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00250 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99564 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50938 * 59.90554 * 9 7 2 11 11 C 1.53153 * 109.50478 * 179.97438 * 9 7 2 12 12 C 1.53267 * 109.49315 * 189.46133 * 11 9 7 13 13 N 1.46479 * 108.79083 * 309.61986 * 12 11 9 14 14 C 1.36306 * 127.77300 * 197.46420 * 13 12 11 15 15 C 1.34855 * 106.68943 * 180.02562 * 14 13 12 16 16 N 1.34294 * 108.06871 * 359.62863 * 15 14 13 17 17 C 1.30094 * 109.21327 * 0.26431 * 16 15 14 18 18 C 1.51039 * 127.38826 * 179.91750 * 17 16 15 19 19 H 0.96998 * 120.00335 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46608 * 69.45505 * 11 9 7 21 21 H 1.08995 * 109.46607 * 309.46872 * 11 9 7 22 22 H 1.08999 * 109.58313 * 189.82565 * 12 11 9 23 23 H 1.08994 * 109.69635 * 69.47518 * 12 11 9 24 24 H 1.08000 * 126.65806 * 359.90849 * 14 13 12 25 25 H 1.08002 * 125.96890 * 179.90235 * 15 14 13 26 26 H 1.09003 * 109.71462 * 315.64725 * 18 17 16 27 27 H 1.08996 * 109.71798 * 76.29180 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6232 -2.5570 -0.8886 11 6 2.2455 -3.6638 0.0005 12 6 1.4938 -4.9782 -0.2370 13 7 0.3662 -5.0519 0.6951 14 6 -0.3507 -6.1547 1.0526 15 6 -1.2863 -5.7403 1.9310 16 7 -1.1345 -4.4178 2.1082 17 6 -0.1480 -3.9976 1.3717 18 6 0.3729 -2.5846 1.2556 19 1 -0.4850 0.8400 -0.0004 20 1 2.7557 -3.7058 0.9629 21 1 2.9781 -3.5158 -0.7928 22 1 2.1654 -5.8193 -0.0652 23 1 1.1235 -5.0096 -1.2616 24 1 -0.2001 -7.1641 0.6994 25 1 -2.0255 -6.3640 2.4118 26 1 -0.4631 -1.8907 1.1672 27 1 0.9651 -2.3374 2.1367 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259593010.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = 46.958616 kcal Electronic energy + Delta-G solvation = -11877.265568 eV Core-core repulsion = 9828.460976 eV Total energy + Delta-G solvation = -2048.804593 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.52203 -36.03736 -33.26529 -31.39076 -29.04038 -27.80445 -25.01372 -23.04652 -20.91695 -20.42457 -18.01986 -16.41493 -16.28309 -15.11137 -14.54539 -13.78827 -13.32078 -13.17726 -12.84888 -12.68318 -12.00181 -11.48403 -11.07805 -10.95827 -10.63411 -10.44660 -9.97560 -9.52528 -9.16959 -9.07963 -8.88952 -8.49487 -7.59977 -6.09013 -4.17150 2.73523 3.28443 3.34497 3.35660 3.49509 3.86423 4.36485 5.15905 5.23187 5.34538 5.39512 5.54015 5.66554 6.00520 6.16915 6.30502 6.39449 6.65913 6.86190 6.96178 7.14681 7.43594 7.58871 7.65140 7.87397 8.01517 8.25160 8.83896 8.89627 9.49322 10.98066 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066464 B = 0.010938 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.176707 B = 2559.317487 C = 2867.318869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.047 3.953 10 H 0.032 0.968 11 C -0.127 4.127 12 C 0.104 3.896 13 N -0.457 5.457 14 C -0.083 4.083 15 C -0.041 4.041 16 N -0.511 5.511 17 C 0.238 3.762 18 C -0.029 4.029 19 H 0.265 0.735 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.163 0.837 25 H 0.159 0.841 26 H 0.114 0.886 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -8.280 -0.416 8.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.028 3.972 10 H 0.050 0.950 11 C -0.164 4.164 12 C -0.018 4.018 13 N -0.140 5.140 14 C -0.216 4.216 15 C -0.189 4.189 16 N -0.230 5.230 17 C -0.025 4.025 18 C -0.068 4.068 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.181 0.819 25 H 0.177 0.823 26 H 0.132 0.868 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.947 -7.688 -0.016 7.931 hybrid contribution 0.837 0.094 -0.560 1.011 sum 2.784 -7.594 -0.575 8.109 Atomic orbital electron populations 1.69870 1.05937 1.27104 1.49403 1.25005 0.94883 0.99315 0.94606 0.86602 0.79561 0.82889 0.78633 1.20270 1.21203 1.20148 1.21006 0.92899 0.89945 1.52180 0.92246 1.18781 0.92378 0.92166 0.93857 0.94992 1.22047 0.99319 0.93037 1.02018 1.22056 0.86660 1.00824 0.92259 1.45530 1.26295 1.07916 1.34268 1.22348 1.00099 0.92585 1.06603 1.22251 1.01754 0.92470 1.02429 1.70136 1.17864 1.10677 1.24329 1.24544 0.92634 0.93172 0.92133 1.20650 1.01590 0.84478 1.00098 0.92536 0.92133 0.90517 0.90805 0.90618 0.81940 0.82326 0.86843 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 11.51 55.43 0.64 -24.07 15 2 C 0.06 1.72 5.31 -17.82 -0.09 1.63 15 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -13.56 8.53 -34.44 -0.29 -13.85 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.05 1.12 2.12 -91.47 -0.19 0.93 15 10 H 0.03 0.83 8.12 -51.93 -0.42 0.41 15 11 C -0.13 -2.40 5.18 -26.51 -0.14 -2.54 15 12 C 0.10 1.72 6.98 -3.92 -0.03 1.70 15 13 N -0.46 -8.90 3.13 -113.76 -0.36 -9.25 15 14 C -0.08 -1.43 11.64 -16.76 -0.20 -1.63 15 15 C -0.04 -0.77 11.87 -17.68 -0.21 -0.98 15 16 N -0.51 -11.70 11.24 -10.62 -0.12 -11.82 15 17 C 0.24 5.42 7.65 -155.24 -1.19 4.23 15 18 C -0.03 -0.70 5.21 -27.50 -0.14 -0.84 15 19 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 20 H 0.06 1.15 8.12 -51.93 -0.42 0.73 15 21 H 0.08 1.34 8.11 -51.93 -0.42 0.92 15 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 24 H 0.16 2.11 8.06 -52.49 -0.42 1.69 15 25 H 0.16 2.42 8.06 -52.49 -0.42 2.00 15 26 H 0.11 3.08 6.52 -51.93 -0.34 2.74 15 27 H 0.07 1.67 8.11 -51.93 -0.42 1.25 15 LS Contribution 228.67 15.07 3.45 3.45 Total: -1.00 -29.40 228.67 -7.15 -36.55 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.26 Total: 0.97 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.48 Total: -11.35 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.16 Total: -45.14 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.40 -7.15 -36.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259593010.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.512 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds