Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30792 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47252 * 299.99648 * 3 2 1 6 6 H 1.48500 * 109.47199 * 60.00088 * 3 2 1 7 7 C 1.39980 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.41201 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.40762 * 119.75288 * 179.97438 * 9 7 2 11 11 C 1.38093 * 118.84692 * 180.02562 * 10 9 7 12 12 C 1.40176 * 118.70157 * 0.02562 * 11 10 9 13 13 C 1.39125 * 119.30690 * 359.97438 * 12 11 10 14 14 N 1.31473 * 120.84983 * 0.02562 * 13 12 11 15 15 O 1.36136 * 108.44727 * 179.97438 * 12 11 10 16 16 C 1.44007 * 105.56969 * 17.21824 * 15 12 11 17 17 O 1.36048 * 132.62325 * 180.02562 * 11 10 9 18 18 H 0.96991 * 119.99882 * 359.97438 * 1 2 3 19 19 H 1.08000 * 120.57515 * 359.97438 * 10 9 7 20 20 H 1.07997 * 119.57552 * 179.72476 * 13 12 11 21 21 H 1.09005 * 110.54095 * 91.54027 * 16 15 12 22 22 H 1.08997 * 110.54786 * 214.34069 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7019 1.3465 0.0006 5 1 1.8832 2.3965 -1.2125 6 1 1.8832 2.3965 1.2125 7 6 2.0079 -1.2122 0.0005 8 1 3.0878 -1.2122 0.0001 9 6 1.3019 -2.4351 0.0005 10 6 2.0111 -3.6511 0.0005 11 6 1.3019 -4.8360 0.0000 12 6 -0.0989 -4.7821 -0.0011 13 6 -0.7328 -3.5437 -0.0010 14 7 -0.0352 -2.4293 -0.0005 15 8 -0.5789 -6.0560 -0.0020 16 6 0.5244 -6.8852 0.4091 17 8 1.6877 -6.1406 0.0003 18 1 -0.4849 0.8400 0.0004 19 1 3.0911 -3.6572 0.0001 20 1 -1.8117 -3.4972 -0.0064 21 1 0.5181 -7.0216 1.4906 22 1 0.4890 -7.8487 -0.0992 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259779432.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = -28.810520 kcal Electronic energy + Delta-G solvation = -11549.896037 eV Core-core repulsion = 9264.254092 eV Total energy + Delta-G solvation = -2285.641946 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.95319 -37.35479 -35.22880 -33.51540 -30.15548 -29.44421 -25.90611 -24.75392 -22.07365 -21.60799 -18.26572 -16.81344 -16.67197 -15.64894 -15.42006 -14.81120 -13.69737 -13.38511 -12.97598 -12.77191 -12.31466 -12.00074 -11.38897 -11.32826 -10.88489 -10.64597 -10.52555 -10.07969 -9.28770 -7.94101 -7.91555 -7.24058 -6.59267 -4.62715 2.53341 2.71006 3.04013 3.06920 3.08688 3.80143 3.91217 4.42865 4.59801 5.35062 5.51864 5.66094 5.77113 6.11390 6.28562 6.66702 6.84408 7.01288 7.21939 7.31195 7.42074 8.03216 8.16427 8.49534 8.73802 9.89674 10.16381 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.089627 B = 0.010341 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.331017 B = 2706.955586 C = 2997.479519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.065 3.935 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.416 4.416 8 H 0.089 0.911 9 C 0.260 3.740 10 C -0.256 4.256 11 C 0.091 3.909 12 C -0.191 4.191 13 C 0.163 3.837 14 N -0.471 5.471 15 O -0.320 6.320 16 C 0.215 3.785 17 O -0.325 6.325 18 H 0.276 0.724 19 H 0.111 0.889 20 H 0.132 0.868 21 H 0.063 0.937 22 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -3.192 0.975 3.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.447 4.447 8 H 0.108 0.892 9 C 0.136 3.864 10 C -0.279 4.279 11 C 0.042 3.958 12 C -0.239 4.239 13 C -0.003 4.003 14 N -0.186 5.186 15 O -0.236 6.236 16 C 0.102 3.898 17 O -0.241 6.241 18 H 0.087 0.913 19 H 0.129 0.871 20 H 0.149 0.851 21 H 0.080 0.920 22 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.436 -2.446 0.868 2.631 hybrid contribution 0.815 -0.468 0.098 0.945 sum 1.250 -2.914 0.966 3.315 Atomic orbital electron populations 1.70135 1.07270 1.28213 1.27390 1.26115 0.95011 1.01361 0.93603 0.86168 0.80782 0.80630 0.78703 1.18249 1.19659 1.19674 1.19597 0.94577 0.88921 1.41615 0.89247 1.18406 0.88016 0.90984 0.89004 1.20869 0.99314 0.88652 1.19068 1.19755 0.92594 0.83955 0.99526 1.20690 0.91845 0.86023 1.25348 1.21927 0.99408 0.83948 0.95033 1.68975 1.07242 1.23116 1.19268 1.87063 1.34681 1.15352 1.86536 1.25211 0.73086 0.93033 0.98458 1.87115 1.35940 1.16035 1.85026 0.91251 0.87058 0.85100 0.91958 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.26 11.45 55.55 0.64 -17.63 14 2 C 0.07 1.60 5.50 -17.34 -0.10 1.51 14 3 Si 0.91 17.86 29.56 -169.99 -5.02 12.83 14 4 H -0.26 -4.96 7.11 56.52 0.40 -4.55 14 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 6 H -0.27 -5.23 7.11 56.52 0.40 -4.82 14 7 C -0.42 -10.81 9.13 -37.81 -0.35 -11.16 14 8 H 0.09 2.15 7.85 -52.49 -0.41 1.74 14 9 C 0.26 7.09 6.55 -84.97 -0.56 6.53 14 10 C -0.26 -6.51 9.85 -38.68 -0.38 -6.89 14 11 C 0.09 2.26 7.21 -38.91 -0.28 1.98 14 12 C -0.19 -4.69 7.23 -38.53 -0.28 -4.97 14 13 C 0.16 4.07 11.21 -17.38 -0.19 3.88 14 14 N -0.47 -12.92 7.84 -11.02 -0.09 -13.01 14 15 O -0.32 -7.03 11.38 -44.49 -0.51 -7.54 14 16 C 0.22 3.88 8.88 101.05 0.90 4.78 14 17 O -0.33 -7.16 11.39 -44.21 -0.50 -7.66 14 18 H 0.28 6.37 8.29 -40.82 -0.34 6.03 14 19 H 0.11 2.61 8.06 -52.49 -0.42 2.19 14 20 H 0.13 2.91 8.06 -52.49 -0.42 2.49 14 21 H 0.06 1.00 8.14 -51.93 -0.42 0.57 14 22 H 0.11 1.52 8.14 -51.93 -0.42 1.10 14 LS Contribution 207.04 15.07 3.12 3.12 Total: -1.00 -29.49 207.04 -4.84 -34.33 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -1.24 Total: -0.10 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.23 Total: -4.35 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.55 Total: -30.63 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.01 Total: -15.20 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.02 Total: 12.83 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -29.49 -4.84 -34.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779432.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.516 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds