Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30792 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47252 * 299.99648 * 3 2 1 6 6 H 1.48500 * 109.47199 * 60.00088 * 3 2 1 7 7 C 1.39980 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.41201 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.40762 * 119.75288 * 179.97438 * 9 7 2 11 11 C 1.38093 * 118.84692 * 180.02562 * 10 9 7 12 12 C 1.40176 * 118.70157 * 0.02562 * 11 10 9 13 13 C 1.39125 * 119.30690 * 359.97438 * 12 11 10 14 14 N 1.31473 * 120.84983 * 0.02562 * 13 12 11 15 15 O 1.36136 * 108.44727 * 179.97438 * 12 11 10 16 16 C 1.44007 * 105.56969 * 17.21824 * 15 12 11 17 17 O 1.36048 * 132.62325 * 180.02562 * 11 10 9 18 18 H 0.96991 * 119.99882 * 359.97438 * 1 2 3 19 19 H 1.08000 * 120.57515 * 359.97438 * 10 9 7 20 20 H 1.07997 * 119.57552 * 179.72476 * 13 12 11 21 21 H 1.09005 * 110.54095 * 91.54027 * 16 15 12 22 22 H 1.08997 * 110.54786 * 214.34069 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7019 1.3465 0.0006 5 1 1.8832 2.3965 -1.2125 6 1 1.8832 2.3965 1.2125 7 6 2.0079 -1.2122 0.0005 8 1 3.0878 -1.2122 0.0001 9 6 1.3019 -2.4351 0.0005 10 6 2.0111 -3.6511 0.0005 11 6 1.3019 -4.8360 0.0000 12 6 -0.0989 -4.7821 -0.0011 13 6 -0.7328 -3.5437 -0.0010 14 7 -0.0352 -2.4293 -0.0005 15 8 -0.5789 -6.0560 -0.0020 16 6 0.5244 -6.8852 0.4091 17 8 1.6877 -6.1406 0.0003 18 1 -0.4849 0.8400 0.0004 19 1 3.0911 -3.6572 0.0001 20 1 -1.8117 -3.4972 -0.0064 21 1 0.5181 -7.0216 1.4906 22 1 0.4890 -7.8487 -0.0992 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259779432.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = -48.582529 kcal Electronic energy + Delta-G solvation = -11550.753416 eV Core-core repulsion = 9264.254092 eV Total energy + Delta-G solvation = -2286.499324 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.69960 -39.25089 -36.95962 -35.38720 -32.08562 -31.30557 -27.71790 -26.40356 -23.97001 -23.49636 -20.11574 -18.63929 -18.33574 -17.45607 -17.19621 -16.47889 -15.46596 -15.18195 -14.71358 -14.59767 -14.14314 -13.72774 -13.11187 -12.92825 -12.76968 -12.37488 -12.15404 -11.78838 -11.08439 -9.88428 -9.86170 -9.09926 -8.43678 -6.58248 0.64497 0.77944 1.44963 1.52682 1.61379 2.12087 2.25095 2.72649 2.87356 3.69622 3.88512 3.98728 4.16654 4.23958 4.53109 4.80104 5.01556 5.14822 5.30922 5.43664 5.49807 6.11759 6.31810 6.60569 6.80296 7.95337 8.35865 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.089627 B = 0.010341 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.331017 B = 2706.955586 C = 2997.479519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.021 3.979 3 Si 0.996 3.004 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.442 4.442 8 H 0.100 0.900 9 C 0.231 3.769 10 C -0.273 4.273 11 C 0.086 3.914 12 C -0.194 4.194 13 C 0.149 3.851 14 N -0.499 5.499 15 O -0.328 6.328 16 C 0.205 3.795 17 O -0.332 6.332 18 H 0.286 0.714 19 H 0.122 0.878 20 H 0.152 0.848 21 H 0.088 0.912 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 -3.264 1.114 3.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.202 4.202 3 Si 0.815 3.185 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.472 4.472 8 H 0.118 0.882 9 C 0.106 3.894 10 C -0.296 4.296 11 C 0.036 3.964 12 C -0.242 4.242 13 C -0.016 4.016 14 N -0.215 5.215 15 O -0.245 6.245 16 C 0.094 3.906 17 O -0.247 6.247 18 H 0.097 0.903 19 H 0.140 0.860 20 H 0.169 0.831 21 H 0.106 0.894 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.963 -2.563 1.011 2.919 hybrid contribution 0.602 -0.609 0.069 0.859 sum 1.565 -3.173 1.080 3.699 Atomic orbital electron populations 1.70208 1.09048 1.29891 1.27546 1.27102 0.95831 1.04838 0.92431 0.84944 0.79371 0.75202 0.78937 1.17456 1.18973 1.18911 1.20029 0.95345 0.89616 1.42239 0.88201 1.18841 0.88448 0.92211 0.89869 1.20982 0.99941 0.88811 1.19863 1.19878 0.92798 0.84898 0.98848 1.20739 0.91937 0.86944 1.24623 1.22250 1.00377 0.84054 0.94908 1.68944 1.07684 1.24408 1.20512 1.87029 1.36199 1.14395 1.86838 1.25898 0.70541 0.93386 1.00820 1.87094 1.37707 1.14843 1.85092 0.90347 0.85984 0.83119 0.89450 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.67 11.45 21.83 0.25 -38.42 14 2 C 0.02 1.03 5.50 85.27 0.47 1.50 14 3 Si 1.00 35.98 29.56 68.60 2.03 38.01 14 4 H -0.25 -8.68 7.11 99.48 0.71 -7.97 14 5 H -0.27 -9.23 7.11 99.48 0.71 -8.53 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 14 7 C -0.44 -23.15 9.13 23.42 0.21 -22.94 14 8 H 0.10 4.81 7.85 -2.91 -0.02 4.78 14 9 C 0.23 12.77 6.55 40.20 0.26 13.04 14 10 C -0.27 -14.03 9.85 22.85 0.23 -13.80 14 11 C 0.09 4.21 7.21 22.71 0.16 4.38 14 12 C -0.19 -9.43 7.23 22.95 0.17 -9.27 14 13 C 0.15 7.52 11.21 84.96 0.95 8.47 14 14 N -0.50 -27.92 7.84 -188.78 -1.48 -29.40 14 15 O -0.33 -13.80 11.38 -71.85 -0.82 -14.61 14 16 C 0.20 6.77 8.88 113.37 1.01 7.78 14 17 O -0.33 -13.99 11.39 -70.84 -0.81 -14.80 14 18 H 0.29 13.17 8.29 -92.72 -0.77 12.40 14 19 H 0.12 5.78 8.06 -2.91 -0.02 5.75 14 20 H 0.15 6.72 8.06 -2.91 -0.02 6.70 14 21 H 0.09 2.49 8.14 -2.38 -0.02 2.47 14 22 H 0.16 3.68 8.14 -2.39 -0.02 3.66 14 Total: -1.00 -63.15 207.04 3.88 -59.27 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.24 Total: 10.79 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 3.46 Total: -10.84 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.23 Total: -67.82 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -1.62 Total: -29.41 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -63.15 3.88 -59.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779432.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.686 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds