Wall clock time and date at job start Mon Mar 30 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34988 * 126.41586 * 2 1 4 4 N 1.30413 * 108.70371 * 179.97438 * 3 2 1 5 5 C 1.34495 * 109.30013 * 359.97438 * 4 3 2 6 6 C 1.34423 * 107.85794 * 359.97438 * 5 4 3 7 7 C 1.51187 * 110.52947 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.34776 * 257.86575 * 7 6 5 9 9 C 1.50695 * 110.34506 * 135.69711 * 7 6 5 10 10 H 1.08000 * 120.00310 * 359.97438 * 9 7 6 11 11 C 1.37883 * 119.99703 * 180.02562 * 9 7 6 12 12 N 1.31510 * 119.99982 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 119.99756 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47287 * 60.00133 * 13 11 9 15 15 H 1.48502 * 109.47160 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47312 * 299.99799 * 13 11 9 17 17 C 1.54489 * 104.93728 * 16.83214 * 7 6 5 18 18 C 1.51372 * 141.86094 * 179.97438 * 5 4 3 19 19 H 1.08996 * 109.47469 * 270.04366 * 1 2 3 20 20 H 1.08997 * 109.47035 * 30.05247 * 1 2 3 21 21 H 1.09007 * 109.46739 * 150.04494 * 1 2 3 22 22 H 1.08001 * 125.65088 * 359.95690 * 3 2 1 23 23 H 0.97008 * 119.99651 * 180.02562 * 12 11 9 24 24 H 1.09003 * 110.94158 * 92.61988 * 17 7 6 25 25 H 1.08994 * 110.94500 * 216.32095 * 17 7 6 26 26 H 1.08997 * 110.33760 * 282.01402 * 18 5 4 27 27 H 1.09002 * 110.33721 * 44.25403 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0863 0.0000 4 7 3.5087 0.6895 0.0006 5 6 3.5459 -0.6549 0.0015 6 6 2.2784 -1.1024 0.0021 7 6 2.2498 -2.6140 0.0038 8 1 2.0278 -2.9900 -0.9949 9 6 1.2290 -3.1176 0.9913 10 1 0.6473 -2.4167 1.5716 11 6 1.0382 -4.4734 1.1547 12 7 1.7468 -5.3269 0.4484 13 14 -0.2277 -5.0976 2.3783 14 1 -1.5715 -4.5889 2.0032 15 1 -0.2386 -6.5826 2.3651 16 1 0.1211 -4.6178 3.7396 17 6 3.6708 -3.0387 0.4364 18 6 4.5134 -1.8191 0.0021 19 1 -0.3634 0.0008 1.0276 20 1 -0.3633 0.8895 -0.5146 21 1 -0.3633 -0.8905 -0.5132 22 1 1.9338 2.1138 -0.0007 23 1 1.6123 -6.2808 0.5631 24 1 3.7224 -3.1839 1.5155 25 1 3.9864 -3.9383 -0.0919 26 1 4.9189 -1.9752 -0.9975 27 1 5.3187 -1.6421 0.7150 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786219.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:28 Heat of formation + Delta-G solvation = 46.761535 kcal Electronic energy + Delta-G solvation = -11909.161869 eV Core-core repulsion = 9860.348730 eV Total energy + Delta-G solvation = -2048.813139 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.01693 -37.51037 -34.97947 -33.92373 -29.63711 -28.71607 -27.42972 -25.40388 -22.65215 -20.83651 -20.43811 -18.44972 -17.43713 -16.57942 -16.35716 -15.33783 -15.24097 -14.46421 -14.04129 -13.72684 -13.47169 -13.31827 -12.94315 -12.78606 -12.54952 -12.37681 -11.89788 -11.62820 -11.08570 -10.56858 -10.50033 -10.23323 -8.88536 -8.13271 -6.25977 1.32292 1.42225 1.43613 1.50781 2.03821 2.26506 2.42646 3.15975 3.44028 3.95555 4.11210 4.32550 4.46804 4.51648 4.62034 4.74094 4.86642 5.07860 5.20597 5.32953 5.53283 5.58693 5.79527 5.81782 5.91331 6.26475 6.61027 6.77307 7.26819 7.42217 8.93511 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043207 B = 0.013857 C = 0.011125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.893591 B = 2020.104511 C = 2516.140786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.451 5.451 3 C 0.173 3.827 4 N -0.519 5.519 5 C -0.076 4.076 6 C -0.029 4.029 7 C 0.121 3.879 8 H 0.015 0.985 9 C -0.530 4.530 10 H 0.048 0.952 11 C 0.020 3.980 12 N -0.913 5.913 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.276 1.276 17 C -0.076 4.076 18 C -0.026 4.026 19 H 0.076 0.924 20 H 0.122 0.878 21 H 0.071 0.929 22 H 0.251 0.749 23 H 0.265 0.735 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 7.876 -0.439 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.133 5.133 3 C -0.108 4.108 4 N -0.239 5.239 5 C -0.203 4.203 6 C -0.146 4.146 7 C 0.102 3.898 8 H 0.033 0.967 9 C -0.568 4.568 10 H 0.067 0.933 11 C -0.180 4.180 12 N -0.551 5.551 13 Si 0.779 3.221 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.201 1.201 17 C -0.115 4.115 18 C -0.065 4.065 19 H 0.095 0.905 20 H 0.141 0.859 21 H 0.090 0.910 22 H 0.267 0.733 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.470 8.213 -0.479 8.590 hybrid contribution -1.343 -1.059 0.570 1.802 sum -3.812 7.154 0.091 8.107 Atomic orbital electron populations 1.22181 0.75075 1.05319 1.04062 1.44859 1.08590 1.05319 1.54582 1.25668 0.84163 0.94478 1.06456 1.69516 1.21554 1.10867 1.21958 1.21766 0.95869 0.91164 1.11467 1.22551 0.91568 0.93758 1.06719 1.17791 0.94824 0.81467 0.95743 0.96746 1.21195 1.21136 0.91769 1.22700 0.93330 1.25680 0.97809 0.96991 0.97477 1.70040 1.41316 1.02442 1.41344 0.85677 0.79746 0.77200 0.79436 1.19337 1.20766 1.20132 1.22091 0.94417 0.95517 0.99483 1.20450 0.95445 0.89150 1.01433 0.90517 0.85929 0.90970 0.73316 0.92642 0.93662 0.91683 0.90609 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 11.18 127.77 1.43 3.52 15 2 N -0.45 -16.90 3.15 -537.51 -1.70 -18.60 15 3 C 0.17 5.89 12.56 180.31 2.26 8.15 15 4 N -0.52 -21.92 11.26 -187.67 -2.11 -24.03 15 5 C -0.08 -3.48 7.98 41.49 0.33 -3.15 15 6 C -0.03 -1.37 6.90 41.03 0.28 -1.08 15 7 C 0.12 6.25 2.76 -11.63 -0.03 6.22 15 8 H 0.01 0.82 8.14 -2.39 -0.02 0.80 15 9 C -0.53 -28.63 8.43 25.60 0.22 -28.41 15 10 H 0.05 2.60 7.76 -2.91 -0.02 2.57 15 11 C 0.02 1.10 5.34 84.66 0.45 1.55 15 12 N -0.91 -51.18 12.56 21.45 0.27 -50.91 15 13 Si 0.95 42.24 29.54 68.60 2.03 44.26 15 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 15 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 17 C -0.08 -3.65 5.83 31.60 0.18 -3.47 15 18 C -0.03 -1.11 6.79 30.56 0.21 -0.91 15 19 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.07 2.26 8.14 -2.38 -0.02 2.25 15 22 H 0.25 5.34 8.06 -2.91 -0.02 5.31 15 23 H 0.26 14.10 8.31 -92.70 -0.77 13.33 15 24 H 0.04 2.27 7.91 -2.39 -0.02 2.25 15 25 H 0.06 3.17 8.02 -2.39 -0.02 3.15 15 26 H 0.08 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 Total: -1.00 -65.93 234.52 4.97 -60.96 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.15 Total: 5.89 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 5.34 Total: -17.57 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -3.54 Total: -93.54 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -65.93 4.97 -60.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786219.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.718 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds