Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47299 * 2 1 4 4 N 1.32048 * 118.97492 * 269.97230 * 3 2 1 5 5 C 1.32440 * 121.29180 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.37216 * 179.97438 * 5 4 3 7 7 C 1.38319 * 119.24788 * 0.02562 * 5 4 3 8 8 C 1.40898 * 118.15904 * 0.02562 * 7 5 4 9 9 C 1.41551 * 120.66192 * 180.25296 * 8 7 5 10 10 H 1.08002 * 119.99934 * 359.72596 * 9 8 7 11 11 C 1.40113 * 120.00321 * 179.71758 * 9 8 7 12 12 N 1.30672 * 119.99575 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00357 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46959 * 89.99878 * 13 11 9 15 15 H 1.48489 * 109.47387 * 210.00243 * 13 11 9 16 16 H 1.48499 * 109.46940 * 330.00532 * 13 11 9 17 17 N 1.31372 * 118.98291 * 89.99549 * 3 2 1 18 18 H 1.09004 * 109.46854 * 60.00455 * 1 2 3 19 19 H 1.08993 * 109.47226 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47707 * 300.00688 * 1 2 3 21 21 H 1.09000 * 109.47707 * 239.99312 * 2 1 3 22 22 H 1.09004 * 109.46854 * 119.99545 * 2 1 3 23 23 H 1.08995 * 109.47262 * 90.00286 * 6 5 4 24 24 H 1.09000 * 109.46547 * 210.00272 * 6 5 4 25 25 H 1.08998 * 109.47172 * 329.99690 * 6 5 4 26 26 H 1.08007 * 120.91624 * 180.02562 * 7 5 4 27 27 H 0.97003 * 119.99547 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2461 2.0237 -1.1552 5 6 2.6868 3.2715 -1.2087 6 6 2.9242 3.9393 -2.5387 7 6 2.9276 3.9543 -0.0302 8 6 2.6913 3.2844 1.1866 9 6 2.9149 3.9346 2.4239 10 1 3.2744 4.9529 2.4416 11 6 2.6697 3.2573 3.6257 12 7 2.2350 2.0252 3.6043 13 14 2.9641 4.1156 5.2585 14 1 1.7218 4.8090 5.6843 15 1 3.3469 3.1117 6.2835 16 1 4.0576 5.1087 5.1055 17 7 2.2444 2.0210 1.1492 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.8934 -0.5139 -0.8899 22 1 1.8932 -0.5138 0.8901 23 1 2.0125 4.4425 -2.8605 24 1 3.7271 4.6699 -2.4400 25 1 3.2049 3.1885 -3.2773 26 1 3.2869 4.9728 -0.0424 27 1 2.0649 1.5564 4.4363 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799089.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = 19.918126 kcal Electronic energy + Delta-G solvation = -11619.921775 eV Core-core repulsion = 9569.944619 eV Total energy + Delta-G solvation = -2049.977156 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.98030 -34.18247 -33.49698 -31.66852 -29.85930 -27.50254 -25.77109 -23.63483 -21.02498 -20.05672 -17.45981 -15.69770 -14.97246 -14.24141 -13.77778 -13.48616 -13.20555 -12.82969 -12.38064 -12.05743 -11.74406 -11.45469 -11.07732 -11.04802 -10.92235 -10.57822 -10.27879 -10.16546 -9.63938 -8.89376 -8.43864 -7.83056 -7.39057 -6.44433 -4.74563 2.69652 2.86939 3.04307 3.07498 3.23410 3.87943 4.71972 5.32528 5.66490 5.71754 5.94292 5.99288 6.16183 6.23815 6.34423 6.39286 6.51965 6.60857 6.80065 6.89632 6.93076 7.05849 7.23912 7.32039 7.92266 8.06337 8.53557 8.80124 9.13519 10.15002 10.27871 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.013400 C = 0.010116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.016402 B = 2089.018984 C = 2767.363539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 C 0.310 3.690 4 N -0.622 5.622 5 C 0.155 3.845 6 C -0.090 4.090 7 C -0.327 4.327 8 C 0.271 3.729 9 C -0.424 4.424 10 H 0.086 0.914 11 C 0.069 3.931 12 N -0.708 5.708 13 Si 0.910 3.090 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.261 1.261 17 N -0.513 5.513 18 H 0.048 0.952 19 H 0.049 0.951 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 0.119 -1.832 1.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C 0.039 3.961 4 N -0.346 5.346 5 C 0.016 3.984 6 C -0.147 4.147 7 C -0.354 4.354 8 C 0.143 3.857 9 C -0.458 4.458 10 H 0.104 0.896 11 C -0.157 4.157 12 N -0.329 5.329 13 Si 0.734 3.266 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.184 1.184 17 N -0.234 5.234 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.954 -0.956 -1.690 2.164 hybrid contribution 0.456 1.366 0.783 1.639 sum -0.498 0.410 -0.908 1.114 Atomic orbital electron populations 1.21588 0.95317 1.00477 1.01888 1.20011 0.95488 0.90802 1.01761 1.22731 0.92304 0.96029 0.85072 1.67746 1.25112 1.11066 1.30707 1.20843 0.92872 0.90553 0.94181 1.20511 1.00924 0.99281 0.94034 1.22209 1.17181 1.01639 0.94405 1.18772 0.86865 0.87986 0.92114 1.19646 1.37341 0.99674 0.89092 0.89568 1.26127 0.93588 0.94745 1.01289 1.70095 1.25142 1.09078 1.28604 0.86279 0.79776 0.79963 0.80562 1.19293 1.19979 1.18449 1.69179 1.18301 1.10116 1.25762 0.93243 0.93181 0.92449 0.91550 0.90521 0.91920 0.92045 0.91846 0.87750 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.89 37.15 0.37 -2.13 15 2 C -0.04 -0.87 6.36 -27.89 -0.18 -1.05 15 3 C 0.31 8.01 6.89 -157.34 -1.08 6.92 15 4 N -0.62 -15.77 10.25 -7.07 -0.07 -15.85 15 5 C 0.15 3.73 6.82 -82.30 -0.56 3.17 15 6 C -0.09 -1.64 10.21 36.01 0.37 -1.28 15 7 C -0.33 -8.38 9.63 -38.55 -0.37 -8.75 15 8 C 0.27 7.65 6.58 -84.62 -0.56 7.10 15 9 C -0.42 -11.41 9.20 -37.62 -0.35 -11.76 15 10 H 0.09 2.16 7.85 -52.49 -0.41 1.74 15 11 C 0.07 1.76 5.50 -17.34 -0.10 1.66 15 12 N -0.71 -18.70 11.52 55.55 0.64 -18.06 15 13 Si 0.91 18.35 29.56 -169.99 -5.02 13.33 15 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 17 N -0.51 -14.54 7.94 -8.69 -0.07 -14.61 15 18 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.06 1.00 8.09 -51.93 -0.42 0.58 15 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 26 H 0.10 2.43 8.06 -52.48 -0.42 2.00 15 27 H 0.27 6.53 8.29 -40.82 -0.34 6.19 15 LS Contribution 240.97 15.07 3.63 3.63 Total: -1.00 -30.22 240.97 -6.70 -36.92 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.35 Total: 0.75 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.46 Total: -6.12 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.50 Total: -48.51 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.22 -6.70 -36.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799089.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.840 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds