Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47299 * 2 1 4 4 N 1.32048 * 118.97492 * 269.97230 * 3 2 1 5 5 C 1.32440 * 121.29180 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.37216 * 179.97438 * 5 4 3 7 7 C 1.38319 * 119.24788 * 0.02562 * 5 4 3 8 8 C 1.40898 * 118.15904 * 0.02562 * 7 5 4 9 9 C 1.41551 * 120.66192 * 180.25296 * 8 7 5 10 10 H 1.08002 * 119.99934 * 359.72596 * 9 8 7 11 11 C 1.40113 * 120.00321 * 179.71758 * 9 8 7 12 12 N 1.30672 * 119.99575 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00357 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46959 * 89.99878 * 13 11 9 15 15 H 1.48489 * 109.47387 * 210.00243 * 13 11 9 16 16 H 1.48499 * 109.46940 * 330.00532 * 13 11 9 17 17 N 1.31372 * 118.98291 * 89.99549 * 3 2 1 18 18 H 1.09004 * 109.46854 * 60.00455 * 1 2 3 19 19 H 1.08993 * 109.47226 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47707 * 300.00688 * 1 2 3 21 21 H 1.09000 * 109.47707 * 239.99312 * 2 1 3 22 22 H 1.09004 * 109.46854 * 119.99545 * 2 1 3 23 23 H 1.08995 * 109.47262 * 90.00286 * 6 5 4 24 24 H 1.09000 * 109.46547 * 210.00272 * 6 5 4 25 25 H 1.08998 * 109.47172 * 329.99690 * 6 5 4 26 26 H 1.08007 * 120.91624 * 180.02562 * 7 5 4 27 27 H 0.97003 * 119.99547 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2461 2.0237 -1.1552 5 6 2.6868 3.2715 -1.2087 6 6 2.9242 3.9393 -2.5387 7 6 2.9276 3.9543 -0.0302 8 6 2.6913 3.2844 1.1866 9 6 2.9149 3.9346 2.4239 10 1 3.2744 4.9529 2.4416 11 6 2.6697 3.2573 3.6257 12 7 2.2350 2.0252 3.6043 13 14 2.9641 4.1156 5.2585 14 1 1.7218 4.8090 5.6843 15 1 3.3469 3.1117 6.2835 16 1 4.0576 5.1087 5.1055 17 7 2.2444 2.0210 1.1492 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.8934 -0.5139 -0.8899 22 1 1.8932 -0.5138 0.8901 23 1 2.0125 4.4425 -2.8605 24 1 3.7271 4.6699 -2.4400 25 1 3.2049 3.1885 -3.2773 26 1 3.2869 4.9728 -0.0424 27 1 2.0649 1.5564 4.4363 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799089.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = 1.360305 kcal Electronic energy + Delta-G solvation = -11620.726502 eV Core-core repulsion = 9569.944619 eV Total energy + Delta-G solvation = -2050.781884 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90532 -36.10139 -35.23636 -33.56554 -31.63236 -29.32336 -27.63590 -25.36472 -22.93764 -21.85145 -19.42517 -17.54830 -16.86963 -15.94840 -15.65759 -15.33504 -14.82668 -14.53728 -13.98547 -13.72118 -13.26366 -13.12893 -12.82768 -12.69475 -12.64134 -12.31661 -11.92935 -11.84224 -11.46715 -10.84043 -10.40243 -9.77231 -9.36524 -8.36004 -6.77409 0.76907 1.01678 1.39102 1.53272 1.56043 2.18727 2.80795 3.59757 3.78076 3.94052 4.31557 4.46631 4.56805 4.62750 4.76451 4.85349 4.93460 5.00519 5.05089 5.08948 5.23308 5.32795 5.41258 5.46591 6.02115 6.07434 6.58230 6.80163 7.17417 8.22421 8.36016 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.013400 C = 0.010116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.016402 B = 2089.018984 C = 2767.363539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.040 4.040 3 C 0.291 3.709 4 N -0.631 5.631 5 C 0.148 3.852 6 C -0.083 4.083 7 C -0.353 4.353 8 C 0.233 3.767 9 C -0.453 4.453 10 H 0.095 0.905 11 C 0.023 3.977 12 N -0.744 5.744 13 Si 0.995 3.005 14 H -0.261 1.261 15 H -0.265 1.265 16 H -0.254 1.254 17 N -0.546 5.546 18 H 0.047 0.953 19 H 0.089 0.911 20 H 0.032 0.968 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 0.463 -1.848 1.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C 0.020 3.980 4 N -0.355 5.355 5 C 0.008 3.992 6 C -0.140 4.140 7 C -0.379 4.379 8 C 0.105 3.895 9 C -0.487 4.487 10 H 0.113 0.887 11 C -0.201 4.201 12 N -0.365 5.365 13 Si 0.814 3.186 14 H -0.185 1.185 15 H -0.189 1.189 16 H -0.177 1.177 17 N -0.267 5.267 18 H 0.066 0.934 19 H 0.108 0.892 20 H 0.052 0.948 21 H 0.104 0.896 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.138 0.862 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.931 -0.612 -1.733 2.060 hybrid contribution 0.445 1.232 0.713 1.492 sum -0.486 0.621 -1.019 1.289 Atomic orbital electron populations 1.21500 0.93368 1.02678 1.00530 1.20133 0.97070 0.88330 1.02379 1.23611 0.91709 0.97781 0.84917 1.67914 1.25563 1.11769 1.30292 1.21732 0.90970 0.90218 0.96270 1.20585 1.02688 0.99742 0.90977 1.22437 1.18456 1.02579 0.94429 1.19343 0.87676 0.88735 0.93744 1.20082 1.38220 1.00405 0.89966 0.88718 1.27134 0.92634 0.95323 1.04990 1.70181 1.25426 1.10666 1.30265 0.85026 0.79881 0.78757 0.74953 1.18543 1.18947 1.17708 1.69193 1.19717 1.10670 1.27097 0.93425 0.89175 0.94840 0.89590 0.91059 0.89973 0.89836 0.90684 0.86245 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 9.89 71.98 0.71 -3.72 15 2 C -0.04 -1.67 6.36 29.84 0.19 -1.48 15 3 C 0.29 15.20 6.89 138.80 0.96 16.15 15 4 N -0.63 -31.82 10.25 -176.28 -1.81 -33.63 15 5 C 0.15 7.02 6.82 42.49 0.29 7.31 15 6 C -0.08 -2.83 10.21 71.24 0.73 -2.10 15 7 C -0.35 -18.22 9.63 22.94 0.22 -17.99 15 8 C 0.23 13.49 6.58 40.27 0.26 13.75 15 9 C -0.45 -24.87 9.20 23.54 0.22 -24.65 15 10 H 0.09 4.80 7.85 -2.91 -0.02 4.78 15 11 C 0.02 1.16 5.50 85.32 0.47 1.63 15 12 N -0.74 -39.94 11.52 21.85 0.25 -39.69 15 13 Si 0.99 37.38 29.56 68.60 2.03 39.41 15 14 H -0.26 -9.44 7.11 99.48 0.71 -8.74 15 15 H -0.27 -9.45 7.11 99.48 0.71 -8.75 15 16 H -0.25 -9.15 7.11 99.48 0.71 -8.44 15 17 N -0.55 -31.71 7.94 -181.39 -1.44 -33.15 15 18 H 0.05 1.71 8.14 -2.38 -0.02 1.70 15 19 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 20 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.09 3.20 8.14 -2.39 -0.02 3.18 15 22 H 0.07 3.01 8.14 -2.38 -0.02 2.99 15 23 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.08 2.48 8.09 -2.39 -0.02 2.46 15 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.12 5.57 8.06 -2.91 -0.02 5.54 15 27 H 0.28 13.61 8.29 -92.71 -0.77 12.84 15 Total: -1.00 -66.15 240.97 4.23 -61.92 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.15 Total: 16.26 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.05 Total: -11.11 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -3.00 Total: -106.47 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -66.15 4.23 -61.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799089.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.277 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds