Wall clock time and date at job start Mon Mar 30 2020 01:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47135 * 300.00228 * 3 2 1 6 6 H 1.48498 * 109.47191 * 60.00145 * 3 2 1 7 7 C 1.37874 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00784 * 185.12935 * 7 2 1 9 9 C 1.50708 * 119.99629 * 5.12340 * 7 2 1 10 10 H 1.09001 * 109.67693 * 335.06499 * 9 7 2 11 11 C 1.53397 * 109.70864 * 95.60052 * 9 7 2 12 12 C 1.53134 * 109.44321 * 169.39182 * 11 9 7 13 13 C 1.53356 * 109.52478 * 289.99274 * 12 11 9 14 14 C 1.50855 * 108.41513 * 49.99454 * 13 12 11 15 15 N 1.33577 * 128.03936 * 163.24429 * 14 13 12 16 16 C 1.30750 * 109.15392 * 180.08293 * 15 14 13 17 17 N 1.35312 * 108.76439 * 359.97438 * 16 15 14 18 18 H 0.96998 * 126.49821 * 179.97438 * 17 16 15 19 19 C 1.35035 * 123.98906 * 343.28855 * 14 13 12 20 20 H 0.96997 * 119.99709 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47525 * 289.37338 * 11 9 7 22 22 H 1.08998 * 109.47852 * 49.39781 * 11 9 7 23 23 H 1.09001 * 109.46097 * 169.97754 * 12 11 9 24 24 H 1.08996 * 109.45663 * 50.00333 * 12 11 9 25 25 H 1.08997 * 109.67449 * 290.25891 * 13 12 11 26 26 H 1.09006 * 109.70171 * 169.74171 * 13 12 11 27 27 H 1.07997 * 125.61574 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0831 9 6 1.2556 -2.4965 -0.1177 10 1 0.2354 -2.3670 0.2434 11 6 1.2315 -2.9494 -1.5831 12 6 0.7089 -4.3865 -1.6639 13 6 1.7516 -5.3449 -1.0757 14 6 2.1735 -4.8199 0.2742 15 7 2.8104 -5.4739 1.2493 16 6 2.9912 -4.6656 2.2610 17 7 2.4668 -3.4572 1.9517 18 1 2.4595 -2.6695 2.5177 19 6 1.9511 -3.5566 0.6960 20 1 -0.4849 0.8400 0.0004 21 1 0.5772 -2.2921 -2.1558 22 1 2.2403 -2.9059 -1.9936 23 1 0.5229 -4.6472 -2.7058 24 1 -0.2191 -4.4677 -1.0980 25 1 2.6169 -5.3962 -1.7364 26 1 1.3161 -6.3379 -0.9635 27 1 3.4788 -4.9205 3.1903 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259803213.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:55 Heat of formation + Delta-G solvation = 31.364458 kcal Electronic energy + Delta-G solvation = -11914.113514 eV Core-core repulsion = 9864.632707 eV Total energy + Delta-G solvation = -2049.480806 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31441 -35.84924 -33.20416 -31.67678 -28.98342 -27.93603 -25.01203 -21.99053 -21.17743 -20.39245 -17.94764 -16.97861 -16.36891 -14.61875 -14.41344 -13.87275 -13.45880 -12.77107 -12.70057 -12.48059 -11.66180 -11.24373 -11.10123 -10.98054 -10.50326 -10.16130 -9.96209 -9.83961 -9.31976 -8.95348 -8.76224 -8.63693 -7.18735 -6.18285 -4.24853 3.04023 3.18227 3.28028 3.32117 3.89929 4.09434 4.30280 5.10740 5.20693 5.75806 5.81551 5.88061 6.30302 6.34436 6.45322 6.49078 6.64070 6.81633 6.90604 7.00896 7.22111 7.53333 7.60540 7.71988 7.75973 8.21309 8.32619 8.82679 8.92865 9.40946 10.88626 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043674 B = 0.013363 C = 0.011122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.961226 B = 2094.840133 C = 2516.987135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.096 3.904 10 H 0.074 0.926 11 C -0.098 4.098 12 C -0.121 4.121 13 C -0.020 4.020 14 C -0.051 4.051 15 N -0.493 5.493 16 C 0.130 3.870 17 N -0.551 5.551 18 H 0.419 0.581 19 C 0.048 3.952 20 H 0.264 0.736 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -4.269 1.068 4.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C 0.076 3.924 10 H 0.092 0.908 11 C -0.136 4.136 12 C -0.159 4.159 13 C -0.058 4.058 14 C -0.179 4.179 15 N -0.213 5.213 16 C -0.151 4.151 17 N -0.152 5.152 18 H 0.257 0.743 19 C -0.071 4.071 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.208 -5.019 1.029 5.579 hybrid contribution 0.330 2.169 0.500 2.250 sum 2.538 -2.850 1.529 4.111 Atomic orbital electron populations 1.69913 1.05965 1.26944 1.49703 1.25005 0.94857 0.99325 0.94328 0.86540 0.80196 0.83521 0.77806 1.19711 1.20681 1.20974 1.21043 0.93216 0.89972 1.51533 0.92682 1.17722 0.96768 0.88847 0.89015 0.90817 1.21675 0.99885 0.93049 0.99015 1.21704 0.98199 0.96781 0.99237 1.19743 0.97920 0.97706 0.90472 1.20384 1.08060 0.91919 0.97567 1.69749 1.17878 1.32895 1.00802 1.24618 1.07004 0.82522 1.00977 1.42882 1.44387 1.12965 1.14993 0.74347 1.22158 1.00865 0.98091 0.85988 0.92636 0.92174 0.93284 0.92798 0.92427 0.92084 0.92159 0.78914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 12.77 55.43 0.71 -23.68 15 2 C 0.07 1.78 5.45 -17.82 -0.10 1.69 15 3 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.52 -13.53 8.25 -34.44 -0.28 -13.81 15 8 H 0.05 1.46 7.82 -52.49 -0.41 1.05 15 9 C 0.10 2.33 2.63 -92.74 -0.24 2.09 15 10 H 0.07 1.98 7.25 -51.93 -0.38 1.60 15 11 C -0.10 -2.14 5.22 -26.46 -0.14 -2.27 15 12 C -0.12 -2.26 5.90 -26.48 -0.16 -2.41 15 13 C -0.02 -0.38 6.30 -27.62 -0.17 -0.55 15 14 C -0.05 -1.11 6.98 -82.90 -0.58 -1.69 15 15 N -0.49 -10.45 11.25 -10.74 -0.12 -10.57 15 16 C 0.13 2.38 13.05 -89.92 -1.17 1.21 15 17 N -0.55 -10.82 6.08 -10.28 -0.06 -10.88 15 18 H 0.42 7.38 8.96 -40.82 -0.37 7.02 15 19 C 0.05 1.09 6.37 -81.85 -0.52 0.57 15 20 H 0.26 6.88 8.31 -40.82 -0.34 6.55 15 21 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.05 1.08 8.08 -51.93 -0.42 0.66 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.06 1.09 8.11 -51.93 -0.42 0.67 15 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.19 2.58 8.06 -52.49 -0.42 2.16 15 LS Contribution 230.27 15.07 3.47 3.47 Total: -1.00 -29.35 230.27 -7.64 -36.98 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.24 Total: 4.56 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.37 Total: -15.20 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.52 Total: -45.14 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.35 -7.64 -36.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259803213.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.348 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds